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Detailed information on CNT30462560


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SRN1|NHL2_ARATH, E-value = 6e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673480Saccharum spontaneumSetaria viridis47.9170.9984.83389forward
CNT30101505Saccharum spontaneumOryza rufipogon60.3443.0679.8490forward
CNT30116529Saccharum spontaneumOryza nivara36.5827.3782.49297forward

Expression of CNT30462560

Peptides detected in this lncRNA

>peptide 1 (30 aa)
CTAQQSTSKSTERINERKNKSTEGSSMSCW*

>peptide 2 (64 aa)
MMPSATASETRMLQRQLKSPQARHLQGQHRQETARLAEPMVGWWSRWPDFGEIPSPMDGIEDGGR

Sequence

>CNT30462560
ATGTACAGCGCAACAATCGACATCGAAATCGACCGAGAGAATCAACGAAAGAAAGAATAAATCTACAGAGGGCAGCAGCATGAGCTGCTGGTAATATCAT
CTACTACTAGCAAATCCCAGCATCCATCCACCCCAGTCTACCAAATCCAAATCCCACCATCAGAACCGGACTTTGCAATCCGTGGGCTGGAACGGCGATG
CGTTGGCGGCACCAGGAGCGGGGACGGAGAGCTCGCAGGTGATCTTCGCCTTGGGCCCGCGGACCTTGAACGCCCAGACCTTGATCCTGAGCTTGGCGTC
GAGATCCACGTTGACGGCGAAGTTCCCCGCGGACTGCTCCTGCCTGAACTCGGCGGCGGTGACGTCGCCCTGGAGGAGCTGCGTGCCGTTGAAGTCGGGG
GACAGCTTCGTGGACGCCTTCGTGGCCTGGTAGAAGGCGTCGAGCGCCACGTAGCCGAAGCGCTGGCCCTTGTAGTAGGCGAGGGACTGGACGTCGTCGT
AGTAGAGGCCGACACGCGTGTTGGGGTTGCGCACCGTCATGGTGACGTTGAGGTCGTAGGTGAGCGTGGAGGTCGAGGAGAGGGAGAACTGGGCGAGGGA
GGTAGAGGACGAGGACGATGATGCCGAGCGCGACGGCGAGCGAGACGAGGATGCTGCAGAGGCAGCTGAAGAGCCCGCAGGCTAGGCACTTGCAGGGGCA
GCACAGGCAGGAGACGGCGCGGCTGGCGGAGCCCATGGTTGGGTGGTGGTCGCGGTGGCCGGATTTTGGTGAAATCCCCTCTCCGATGGATGGAATTGAA
GACGGAGGGCGG