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Detailed information on CNT30462022


BLAST search results

BLAST vs Swiss-Prot:
sp|P37219|ASR2_SOLLC, E-value = 7e-06

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30534473Saccharum spontaneumEucalyptus grandis22.247.7981.51119forward
CNT30295690Saccharum spontaneumTriticum aestivum32.8429.9891.48176forward
CNT30392240Saccharum spontaneumTriticum turgidum31.7221.390.59170forward
CNT30664196Saccharum spontaneumTriticum dicoccoides31.7223.4291.18170forward
CNT30371376Saccharum spontaneumOryza glumipatula33.7737.1792.27181forward
CNT30578128Saccharum spontaneumOryza barthii34.3312.6592.39184forward

Expression of CNT30462022

Peptides detected in this lncRNA

>peptide 1 (83 aa)
IIKLGRVDKIVLHPHVIPKYSTSIQLRIHMSLTRGATHDTPYRSHLFNTIIHAEKMKQVQKHLDTRPAPPHLFSVSLTQATAY*

Sequence

>CNT30462022
AATCATAAAGTTAGGACGAGTTGATAAAATCGTGCTGCATCCACATGTCATACCCAAATATAGTACAAGCATTCAACTACGGATACACATGAGCCTGACT
AGGGGAGCCACACATGACACACCATATCGCTCCCACTTATTCAACACAATTATACACGCAGAGAAAATGAAGCAAGTACAGAAACACCTCGACACACGGC
CGGCCCCACCCCACCTCTTCTCAGTCTCACTCACACAAGCAACAGCTTATTAGCAAGGTCCTGAAAAGGACTTATTATTGTGAACCGTCAAATTAACACG
CACGCAGTACAGAATTAAACAGGTGGTGGTGCTTCTTCTCGCCGCTGGCCTCCTCGGCGTCCTTGTGGTCCTTCTTCTTCTCGTGGTGCTCGTGGAAGGC
GTAGCCGCCGGCGCCCACGGCTGTCGCCGCCGCGACCTCCTCCGTGATCTTGTGCCTGTGCGCGTGCTCGGGGTCCTTCTTCGCCTCGTGCTTCTCGTAC
TACACGGAAGGGAAGAAAAGAATTCATGGAAGACCA