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Detailed information on CNT30461799


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30397702Saccharum spontaneumTriticum turgidum11.4820.185.7177forward

Expression of CNT30461799

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MEWIVITSGSCRDGECGLHTISRDKMTIQV

>peptide 2 (31 aa)
MHGPTMVKDAERRGGMKEAEAVSMVWYDEAT*

>peptide 3 (33 aa)
MAPPPPPAAAAALREPIYGVEYIATRWLDSTMR*

>peptide 4 (43 aa)
MPLVKILPHPRYPAGRHAWTDHGQRCRTKRRNEGSRSSEHGMV*

Sequence

>CNT30461799
ATCAGGACATTTATTTACCGCGATCAAAGAATTTGCTAAGTACGTAGTATTCGGTTCCATATATACGTACCGTGTGGGGTGACAGAGAGGTAGTAGGGAA
CATTTCGAGCACCGGCGACATGCCCCTTGTCAAAATCCTCCCACATCCTAGATATCCGGCCGGCCGGCATGCATGGACCGACCATGGTCAAAGATGCAGA
ACGAAGAGGAGGAATGAAGGAAGCAGAAGCAGTGAGCATGGTATGGTATGATGAAGCAACCTAGTAGCTTATTGTGTACCTGACATCGAGATAGTGGTGT
GTGGAAGAGCTGAGCAGGGCGCACGCCTCCTCCGCATCCACCGTCGGAATCGAAACCATGGCGCCGCCGCCGCCTCCTGCGGCTGCTGCTGCTCTCAGAG
AGCCCATATACGGAGTAGAGTATATAGCTACCAGATGGTTGGATAGTACGATGAGATGAGTTATCTGCAGACTGCAGGTCTCGCATCTCGCCGGGGCGGC
GTTATTTATAGCATGCAGCACCCAGGCAGCGGCTACTACTAGTAGCTCCCCTCTCTCCAATTCAGAGCTGGAAGAAGAGGAATGGAATGGATCGTCATCA
CAAGTGGCAGCTGCAGAGATGGAGAATGCGGCCTACATACCATTTCTCGAGACAAAATGACAATACAAGTA