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Detailed information on CNT30461535


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6EU94|PIP11_ORYSJ, E-value = 7e-35

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671344Saccharum spontaneumSetaria viridis31.6726.9999.37159forward
CNT30640394Saccharum spontaneumNymphaea colorata31.6731.883.02159forward
CNT3020673Saccharum spontaneumCitrullus lanatus26.6912.6185.07134forward
CNT30385796Saccharum spontaneumTriticum turgidum41.0450.1291.75206forward
CNT30658043Saccharum spontaneumTriticum dicoccoides40.4474.0991.13203forward
CNT30131630Saccharum spontaneumLolium perenne39.4473.8891.41198forward
CNT30340874Saccharum spontaneumEragrostis tef12.7523.792.1964reverse complement
CNT3038976Saccharum spontaneumCucumis melo28.8821.2380.69145forward
CNT30148622Saccharum spontaneumBrachypodium distachyon9.7620.0891.8449forward
CNT30495761Saccharum spontaneumDigitaria exilis41.0452.5596.12206forward
CNT30112244Saccharum spontaneumFicus carica29.0822.1282.19146forward

Expression of CNT30461535

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MLAGKNRRSHCSNKEGRRAHRRCRRCSRRARRSSLRRTRT*

>peptide 2 (35 aa)
MGCRSENLLAPRRTSSSFPSIFAALCLSLSSLLPCV

>peptide 3 (49 aa)
RKLHTKSFAESLPWRVVTELSKLKAKLAVAKGGETAPREKTDSRKQRKV*

Sequence

>CNT30461535
CTCGGAAATTGCACACTAAAAGCTTTGCTGAGTCGTTACCATGGAGGGTTGTTACTGAGCTAAGCAAGCTAAAGGCAAAATTAGCCGTAGCAAAAGGGGG
CGAGACCGCCCCGCGAGAGAAAACAGACTCGAGAAAACAACGCAAAGTGTAACAAATAATTGCAGTAAATAAATTAATAAAGTTCATCGCATGTTGGCTG
GAAAAAATAGAAGAAGCCACTGCAGCAACAAGGAAGGAAGGAGAGCTCACCGGAGATGCCGGCGGTGCAGTAGACGAGCGCGAAGATCATCCCTCCGAAG
GACCAGGACTTGAGCTCCCCGGGCTCGAACAGCGGCGCCGGCGGGGGCTCCTTGTAGTCCTTGTCGTCCCCGGCGCCCTGCGCCGCCGTCCCGATGGGCT
GCCGCTCCGAGAACTTGTTGGCGCCCAGGCGCACGTCCTCCTCCTTCCCCTCCATTTTTGCTGCTCTTTGCCTCTCTCTCTCCTCTCTCCTGCCTTGCGT
GC