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Detailed information on CNT30461506


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 2e-99

BLAST vs NONCODE:
NONMTRT002043, E-value = 2e-35

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30253358Saccharum spontaneumAvena sativa39.1157.1392.26465forward
CNT30143320Saccharum spontaneumLolium perenne39.1170.0391.18465forward
CNT30364225Saccharum spontaneumSorghum bicolor41.4664.7891.48493forward
CNT30115854Saccharum spontaneumOryza nivara39.2861.9490.58467forward
CNT30592842Saccharum spontaneumEragrostis curvula38.6956.5892.39460forward

Expression of CNT30461506

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYLSMNISNKVLSNKVPVKTHNNIYTYPYLFIR*

>peptide 2 (32 aa)
MSKLLKSMPLLDEQKLVSCSSMLLHVSKHEYI*

>peptide 3 (86 aa)
MEVHQRAPDRRRYSSSLNDPWLTDHHGDGAPGGGCSPSGYCSLLGYGHPPAACRRRSDAAGPGGCPPCPGSWPSRCQWCRSSQPPG*

>peptide 4 (76 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICICRRITKQQGEYQQKKQSQANKQHMTAGPKIHT*

>peptide 5 (53 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVKVFTNICMPPLRRSTRWRVLSFWML*

>peptide 6 (38 aa)
MYLSMYISNKVPVKPTATHIPIHLLLYLKDEDIFIHPS*

Sequence

>CNT30461506
ACATTGAGCACAAACTTTTAAGTTCAAACATCAAACTTATTCATGATTCAAGCCATACTGCTGTAGAACAGTTTTGGGTATAAAACACACAGGACACAAC
TGGCCCTTTAAACCAACTCAGTAACGACTCATGACACAAACCACAGATACTTAATAGACGACAACCTTCCATATGGAGGTACACCAGAGGGCACCAGACA
GACGCAGGTACAGCAGCAGCTTAAACGACCCATGGCTTACTGACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCT
GCTAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGT
CAATGGTGTCGGAGCTCTCAACCTCCAGGGTAATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAG
GGTGCTCTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGCCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCAGGGGGGATGCCCTCC
TTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAAGACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCT
GCAGAAGGATCACCAAACAACAGGGTGAGTATCAACAAAAGAAACAGTCCCAAGCAAATAAACAGCATATGACGGCAGGGCCAAAAATCCACACATAGCT
GCTGCATATGCCATCATCCAAGTATGTCAAAATTATTAAAAAGCATGCCTTTATTAGATGAACAAAAATTAGTAAGCTGTAGTTCAATGTTGCTCCATGT
ATCTAAGCATGAATATATCTAACAAAGTATTATCTAACAAAGTACCAGTAAAAACCCACAACAACATATACACCTATCCTTATTTGTTTATTAGATAAAC
AAGAATTATTAAACTGTAACAGCATGTTGCTTCATGTATCTAAGCATGTATATATCTAACAAAGTACCAGTAAAACCGACAGCAACACATATACCTATCC
ATTTATTATTATACCTGAAAGACGAAGACATATTTATACATCCATCATAATTATGAAAATATGTGACACACATACAGATCCAAATTTAA