« Back to Saccharum spontaneum search


Detailed information on CNT30460849


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 6e-102

BLAST vs NONCODE:
NONMEST001181, E-value = 1e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189291Saccharum spontaneumSecale cereale78.3661.2590.22460forward
CNT30667831Saccharum spontaneumTriticum dicoccoides78.3660.0590.22460forward

Expression of CNT30460849

Peptides detected in this lncRNA

>peptide 1 (43 aa)
TNSVTTHDTNHRYLIDDNLPYGGTPEGTRQTQVQQQLKRPMAY*

>peptide 2 (53 aa)
MPSLSWILAFTLSMVSELSTSRVMVLPVKVFTNICMPPLRRSTRWRVLSFWML*

>peptide 3 (86 aa)
MEVHQRAPDRRRYSSSLNDPWLTDHHGDGAPGGGCSPSGYCSLLGYGHPPAACRRRSDAAGPGGCPPCPGSWPSRCQWCRSSQPPG*

>peptide 4 (42 aa)
MSRCWSGGMPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKIC

Sequence

>CNT30460849
AAACCAACTCAGTAACGACTCATGACACAAACCACAGATACTTAATAGACGACAACCTTCCATATGGAGGTACACCAGAGGGCACCAGACAGACGCAGGT
ACAGCAGCAGCTTAAACGACCCATGGCTTACTGACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCTGCTAGGGTA
CGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCAATGGTGT
CGGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAATATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGCTCTC
CTTCTGGATGTTGTAGTCAGCAAGCGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGG
ATCTTGGCCTTGACATTGTCGATGGTGTCAGAAGACTCGACCTCGAGGGTGATAGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGC