Detailed information on CNT304607


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690805Zea maysOryza sativa34.5534.0588.4295forward
CNT30523098Zea maysSetaria italica43.2743.7593.28119forward
CNT30285276Zea maysTriticum aestivum26.1826.4790.2872forward
CNT30130961Zea maysLolium perenne23.2726.4585.9464forward
CNT30105441Zea maysOryza longistaminata25.0910.7185.5169reverse complement
CNT30100020Zea maysOryza rufipogon43.6453.8187.5120forward

Expression of CNT304607

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MGAAWRGRRRRGRGLGFCGRWRGRWKRKSPPPFQRSRG*

>peptide 2 (71 aa)
SSWPARDTFSFLKTEVSKSSDGMAVPMTDGDETFAATARRRSAEAATRHGCCVAGKETEGAGFRVLRPMAR*

>peptide 3 (63 aa)
LLMAGQGHLFLLEDGGLEVERRHGGADDRRRRDLRSHGAAAVRGGGDEAWVLRGGEGDGGGGV*

Sequence

>CNT304607
CTCCTCATGGCCGGCCAGGGACACCTTTTCCTTCTTGAAGACGGAGGTCTCGAAGTCGAGCGACGGCATGGCGGTGCCGATGACCGACGGCGACGAGACC
TTCGCAGCCACGGCGCGGCGGCGGTCCGCGGAGGCGGCGACGAGGCATGGGTGCTGCGTGGCGGGGAAGGAGACGGAGGGGGCGGGGTTTAGGGTTTTGC
GGCCGATGGCGAGGTAGGTGGAAGAGGAAGTCGCCGCCGCCATTTCAGAGGAGCAGAGGCTAGTGAAGAGTGAGG