Detailed information on CNT30460584


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0DY81|NMCPA_ORYSJ, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30603645Saccharum spontaneumOryza punctata17.9469.0181.08481forward

Expression of CNT30460584

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MKFSLDLQGFLLQTSLKRLSICYLFLRCKFNLSYLCSYITQGLFK

>peptide 2 (30 aa)
MSCLSDSSFSLVPPSEGSSSSASKESWAIS*

>peptide 3 (30 aa)
STVSQIVTSFSWALCHCPSSLPPLATLPSK*

>peptide 4 (48 aa)
LYCVSDCNVFLLGPLSLPQQFAASCDAALQVKHFPNVLRCLLHLVHLL*

>peptide 5 (56 aa)
MLFQLQFTLQISAFSLQKLIIFHLLVLYIISQSLFLTLKTLQLVLVFFIHFELHII*

>peptide 6 (58 aa)
MSPIALFRALDLASRSFCKLSIDFFLSFNACSLLESLTSKDLTSFSLFNKSASFCVIF*

>peptide 7 (59 aa)
MRCFLSLLYFSRRSFKLLLSECRLSISLLISALSVSSFFLSSSSNDLSICSSLFSTNIF*

>peptide 8 (58 aa)
MPFGLFVLPGSTIRRELILCIKRIMGYLIDRSWLIISIALCCFLKSCAKRYILFCWLL*

>peptide 9 (75 aa)
MCFAAFFILFTYCSSSKPPLSCSTHHDFISLTIILLLKRLTKYRFSIFNYSTNRPCLFHTTFPSASPVLLAPTLL*

Sequence

>CNT30460584
ACTCTACTGTGTCTCAGATTGTAACGTCTTTCTCCTGGGCCCTCTGTCACTGCCCCAGCAGTTTGCCGCCTCTTGCGACGCTGCCCTCCAAGTGAAACAC
TTTCCGAATGTGCTTCGCTGCCTTCTTCATCTTGTTCACTTATTGTAGCTCCAGCAAACCGCCGCTTTCGTGTAGCACCCATCATGACTTTATCTCCCTG
ACCATCATTCTTCTCCTCAAACGTCTCACCAAGTATCGTTTTAGCATCTTCAACTACAGCACGAACAGACCGTGTCTTTTTCACACCACCTTTCCCTCTG
CCTCTCCGGTTTTGTTGGCGCCGACCTTGCTTTGATGTTTCAGGCTGTACACCTGCTTCAGCAGGTGCTGCAGAATCCTTGTCATTTTGATCAACAGAGG
CAATAGTTGCTTCAACTGCCATGTCGTTAGTTCCATCAAAGGACTGAGTGCCAAGAATATCTATACTGTTATCTGCTACACCAACAGAAGACTCCATCTG
AGCATCATCAGCTATGTCATGCCTTTCGGACTCTTCGTTCTCCCTGGTTCCACCATCAGAAGGGAGCTCATCCTCTGCATCAAAAGAATCATGGGCTATC
TCATAGATAGGAGTTGGCTCATAATCTCCATCGCTCTGTGTTGCTTCCTCAAGTCTTGCGCCAAAAGGTATATTCTTTTCTGCTGGTTGCTCTGATGACT
GCTCACCTTTTTTTCTAGGGGAGAACTTGAAAAGCGTTGAGCACTTCCGTAACAAAGAAAAAGGACCACCTGAATTAACAAGGGTTCCTGTATCTAGACC
TGATGTATCAGTGGTCAAGGCACGATCATTTCCCTCAACAGCTAAACTGGGATGTTCAATTTCAGCACTGTCTTTAAGAAGAAGAGAATCTGATACCTCA
AAAATAGAAATACCACAGTTCTTGCATGCCTTGTACTTTTCAGATAGATCGATGAGGTGTTTCCTGTCCCTGTTATATTTCTCTCGGCGTTCCTTCAAAC
TCTTGCTCAGTGAGTGCAGACTCTCAATATCCCTTCTAATATCTGCCTTGTCAGTCTCCAGTTTCTTTCTTTCCTCTAGCAGTAATGATCTTTCCATCTG
CAGCTCCCTTTTCTCCACTAATATCTTCTGAATCTTGGACTCGTTCAACTCAATAGCATGTTGGAGCTTATTTTCCACAAAATCCATTTTCTTATTTAAC
TCATTTTCCTTTTCTTCCAGTTCCTTCTCTTTACTTGCTTGTTTTTGCTCCATCTCCATCTCCAATTCATGCTGTTTCAGCTGCAATTTACGTTGCAGAT
CAGCGCGTTCTCCCTTCAGAAACTCATCATTTTCCATTTGCTTGTGCTTTATATCATCAGTCAAAGCCTTTTCCTTACGCTCAAGACTCTCCAGCTGGTC
CTTGTATTTTTCATCCATTTCGAGCTTCACATCATTTAACCTTTTTTCTTCATTGTCACGCCACCGTTCTAAATTCATCCTCTCAATTTTCAGCTTTTTG
TCCTCCTCTACTAGGAGGGCTCTTTTTTCGTCTAGCTGTTCCCACTCTTCTTCAAATTTCTGCCGTTGCTTCCTCAAATCCTCCATCTCCTCAGATAGGG
AGTTGCTTCGCATTCTGTATTCCTCGATCTCCTTCTTAAGTTTTGCTGTCAGCAAGCTATGCTCCTGCCTCTCTTGCTCTGTGAGTTTCAGATTATTCTG
CTCTTCTGATATTCTTTCCTTTTCAGCTTCTAATGCTGATTTGATCCTTCCAGCTCCAATTTGTATGTCTCCAATTGCTCTCTTCAGAGCCTTGGATTTG
GCATCAAGATCATTCTGCAAACTTTCCATTGATTTCTTCTTATCATTCAATGCCTGCTCACTTTTAGAAAGTTTAACCTCCAAAGATTTAACATCTTTCT
CCCTTTTCAATAAATCCGCTTCATTCTGTGTCATCTTTTGATCAAAAGATTTCCTTTCCCTCTCTAGTTCTAATTCGAAATCCCGTCTTCTGGATTCAAG
CTCCACCTGATGATCCTCAAGAAGCTTCTGGAGCCCCTCCTGGAACACAAGGGAGAGAGCTAGATCAGTCCACTTTTCTCTAGTAGTGACCTTTGCCTCT
CTTTCAACCAACTTTTTTTCCCGCTCTTCCAAGGCACAGCGCTTTGAGTCAGCATCCATTTCCTGTGAATGCAATTCATTTAATCTTCTGTTAATATCAT
TCTCTTTGACTTTCAGAGTAACTTTAGCGGCCTCCACTGTTTTTCTTGCCTCCTCCAGTTCGTCCTGTTTTATCTTGAAAAGTTGGTCATTCTTATTTGC
TCTCTCCTCTCGCTCATTTATAGATCTCTGCAAGTCATTAAGTCTATTCTGACTTTCCTTGAGCTTTTTCTCCCACTCCTGCAGTGATTCCTCCTGCTCC
TTGAGTTGCTTTTCTCGGGCCTTCCGCTCTGTCTCAAAATACAGCTTCTCCTTCTCCAACCTACGTTGACGAGCTTCAGCCTCTTCTAAATCCCGATCAG
CTTGAGACTTCTTGCGGTTTGCCTCTGCAAGTTTGGCATCTGCAGCATGAAGTTTTCCCTCGATCTCCAAGGATTTCTCCTCCAAACGAGCCTCAAGAGA
CTGAGCATCTGTTATCTTTTTCTCAGATGTAAATTTAACCTCAGCTATCTCTGCTCGTATATCACGCAAGGCCTTTTCAAG