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Detailed information on CNT30460356


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691393Saccharum spontaneumOryza sativa24.8432.2584.87119forward
CNT30225098Saccharum spontaneumHordeum vulgare20.0434.5386.4696forward
CNT30396861Saccharum spontaneumTriticum turgidum25.8917.0383.87124forward
CNT30667276Saccharum spontaneumTriticum dicoccoides25.8923.2683.87124forward
CNT3066989Saccharum spontaneumLeersia perrieri27.1412.6586.92130forward
CNT30106373Saccharum spontaneumOryza longistaminata24.8410.1584.87119forward
CNT30149601Saccharum spontaneumBrachypodium distachyon26.314.0588.89126forward
CNT30584129Saccharum spontaneumEchinochloa crusgalli35.9140.1990.7172forward
CNT30603733Saccharum spontaneumOryza punctata27.1424.5386.92130forward
CNT30556342Saccharum spontaneumPanicum hallii38.6211.7589.19185forward

Expression of CNT30460356

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MDPPSAQVMSATDDFQDKAVDECCSCCYDCCSSILDFLCCSS*

>peptide 2 (53 aa)
LGSVPTIIVASRRAGSAVRVLRHISFFPDSAAPPQTRGTTGHGSPIGSGDVRD*

>peptide 3 (34 aa)
MLLVLIDRSMLLLNGPAEILKEREALPSLADLGF*

Sequence

>CNT30460356
ACTTGGTAGTGTTCCTACTATAATAGTAGCCTCTCGCCGAGCCGGCTCTGCTGTCCGCGTTCTTCGCCACATCTCTTTCTTCCCGGACTCCGCCGCTCCC
CCGCAGACTCGAGGAACTACCGGCCATGGATCCCCCATCGGCTCAGGTGATGTCCGCGACTGACGACTTCCAGGACAAGGCCGTCGACGAGTGTTGCTCT
TGCTGCTACGATTGCTGCTCCAGCATCCTGGACTTCCTATGCTGCTCGTCTTGATCGATCGATCGATGCTGCTCCTCAACGGCCCTGCGGAAATTCTCAA
GGAGCGGGAGGCCTTGCCGTCGCTCGCTGATCTTGGATTCTAGATGTCGTGGGATTCGTATGTTCTTTAGGTCCTTTTTCCTTTAAAGAAGTTCTTTAGG
TCCTTCGGTGACGATATTTGTAAGCCGGATTCAAGTCATCAGTAACAGTAAGGAAACCTGATAGACTGCTGAACTGCCG