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Detailed information on CNT30460114


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-98

BLAST vs NONCODE:
NONPPAT000061, E-value = 1e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30304238Saccharum spontaneumTriticum aestivum31.1561.2990.36467forward
CNT30686251Saccharum spontaneumTriticum urartu31.2922.0591.04469forward
CNT30364843Saccharum spontaneumSorghum bicolor29.8966.3793.53448forward

Expression of CNT30460114

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MYLSTNISNKVLSNKVPVKTHNNIYTYPYLFIR*

>peptide 2 (34 aa)
QQQIKFDQANIRRHINEKNHIEHKLFKSKHQTYS*

>peptide 3 (32 aa)
MSKLLKSMPLLDEQKLVSCSSMLLHVSKHEYI*

>peptide 4 (40 aa)
MVSELSTSRVMVFPVKVFTNICMPPLRRSTRWRVLSFWML*

>peptide 5 (86 aa)
MEVHQRAPDRRRYSSSLNDPWLTDHHGDGAPGGGCSPSGYCSLLGYGHPPAACRQRSDAADPGGYPPCPGSLPSRCRWCQSSQPPG*

>peptide 6 (47 aa)
MPSLSWILALTLSMVSEDSTSRVIVLPVRVFTKICICRRITKQQGEY*

>peptide 7 (38 aa)
MYLSMYISNKVPVEPTATHIPIHLLLYLKDEDIFIHPS*

Sequence

>CNT30460114
AACAGCAGCAAATCAAATTTGATCAGGCAAATATTAGGAGACATATAAACGAAAAAAACCATATTGAACACAAACTTTTTAAGTCCAAACATCAAACTTA
TTCATGATGAAGCCATACTGCTGCAGAACAGTTTAGGTATCACACACACAGGACACAACCGGTCCTTTAAACCAACTCAGTCACGACTCATGACACAAAC
CACAGATACTTAATAGACGACAACCACCATATGGAGGTACACCAGAGGGCACCAGACAGACGCAGGTACAGCAGCAGCTTAAACGACCCATGGCTTACTG
ACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATATTGTAGTCTGCTAGGGTACGGCCATCCTCCAGCTGCTTGCCGGCAAAGATC
AGACGCTGCTGATCCGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTCACGTTGTCGATGGTGTCAGAGCTCTCAACCTCCAGGGTAATGGTCTTCC
CAGTCAAGGTCTTCACAAATATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAATCCGCAAGGGTGCGGCC
ATCCTCCAGCTGCTTGCCGGCGAAGATAAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAA
GACTCCACCTCGAGGGTGATAGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTGCAGAAGGATCACCAAACAACAGGGTGAGTATTAACAAAAGA
AACAGTCCCAAGCAAATAAACAGCATATGACGGCAGGGCCAAAAATCCACACATAGCTGCTGCATATGCCATCATCCAAGTATGTCAAAATTATTAAAAA
GCATGCCTTTATTAGATGAACAAAAATTAGTAAGCTGTAGTTCAATGTTGCTCCATGTATCTAAGCACGAATATATCTAACAAAGTACTATCTAACAAAG
TACCAGTAAAAACCCACAACAACATATACACCTATCCTTATTTGTTTATTAGATAAACAAGAATTATTAAACTGTAACAGCATGTTGCTTCATGTATCTA
AGCATGTATATATCTAACAAAGTACCAGTAGAACCAACAGCAACACATATACCTATCCATTTATTATTATACCTGAAAGACGAAGACATATTTATACATC
CATCATAATTATGAAAATATGTGACACACATACAGATCCAAATTTAATAAATATAAACCTAGAGGTAGTCCGAAACAGTATACTCTGACCTCCCAATCAG
ACAACCAAACCAAAAGAAAGGCATGCTAAAAATTATGACCTGACAATTAAGTGCACAGGACATAGCTAGCACGATCGAACCATAACTAAGGCTAACATCA
TACCACGGAAAGATTAAACGGAACCTAGGCAACGAAAAAATATAGCAGATCATGAAATCGACCTCATCTGCGAACCAGCTAGAACCATCCCAGGATTCC