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Detailed information on CNT30460105


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30520108Saccharum spontaneumSetaria italica14.1337.25100114forward
CNT30591229Saccharum spontaneumMusa acuminata8.6722.0888.5770forward
CNT30246308Saccharum spontaneumAvena sativa12.8936.3683.65104forward

Expression of CNT30460105

Peptides detected in this lncRNA

>peptide 1 (52 aa)
TDGTCTTAAACRESMEMEANDSRNERAWCDVFTQAAGLDVQFGRTDITNHSS*

>peptide 2 (69 aa)
MKVPLVWVKKHPKLAPTTHCHPTPYRLSNSCSASRRSSIIHSFMIPYSHPSNQMRDENGERAREEGVPS*

>peptide 3 (91 aa)
MWPAMPRQSATSKRSSAREAAVVAAACIRAGMSVSSTRAFPSNILLFTLSHTLLWLCTRNGGSGRPAGWLGFLIPWGQGRRLASRHINGGEK

>peptide 4 (94 aa)
RTALAQPLLLVESRWKWRQMIRGTSEHGAMYLHRLLDWTYSLDVRTLQTILASTSPKFTAYNNFRRTKRPGPWRAAGQEQDSEIDWLIRRRRRP*

>peptide 5 (37 aa)
MAMHEEWRIRQAGWLAWFLDSVGAGQTARLKAYKWRRE

Sequence

>CNT30460105
CACGGACGGCACTTGCACAACCGCTGCTGCTTGTAGAGAGTCGATGGAAATGGAGGCAAATGATTCGAGGAACGAGCGAGCATGGTGCGATGTATTTACA
CAGGCTGCTGGACTGGACGTACAGTTTGGACGTACGGACATTACAAACCATTCTAGCTAGTACTAGTCCAAAGTTCACGGCTTATAATAATTTCAGACGA
ACGAAAAGGCCGGGTCCGTGGCGCGCGGCCGGGCAGGAGCAGGATTCGGAGATTGATTGGTTGATTAGGAGGCGGCGGCGGCCTTGAAGAGGAGGAAGGA
GAGGCGCTCGAGGGAGAAGTAGATGAAGGTGCCGCTGGTGTGGGTGAAGAAGCACCCGAAGTTGGCGCCCACCACGCACTGCCACCCAACGCCGTACCGC
TTGTCGAACTCCTGCAGCGCAAGCAGGAGATCTTCAATCATACATTCATTCATGATCCCATATTCCCACCCATCAAATCAAATGCGTGACGAGAACGGCG
AGAGAGCCAGAGAGGAGGGCGTGCCGTCTTGATGTGGCCGGCGATGCCGCGGCAGTCGGCGACGTCGAAGAGGTCGAGCGCGCGGGAGGCCGCCGTGGTC
GCCGCGGCCTGCATCCGCGCCGGCATGTCCGTGTCCTCCACCCGCGCCTTCCCCTCCAACATTCTCCTCTTCACCCTCTCGCACACACTGCTATGGCTAT
GCACGAGGAATGGAGGATCCGGCAGGCCGGCTGGCTGGCTTGGTTTCTTGATTCCGTGGGGGCAGGGCAGACGGCTCGCCTCAAGGCATATAAATGGAGG
AGAGAAG