Detailed information on CNT30459979


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189315Saccharum spontaneumSecale cereale13.4590.7188.58254forward
CNT30552730Saccharum spontaneumOryza glaberrima16.9574.0789.38320forward
CNT30364181Saccharum spontaneumSorghum bicolor23.283.2795.21438forward
CNT30369690Saccharum spontaneumOryza glumipatula31.2559.1286.61590forward
CNT30100535Saccharum spontaneumOryza rufipogon31.2531.586.95590forward
CNT30575376Saccharum spontaneumOryza barthii20.539.1386.82387forward
CNT30115991Saccharum spontaneumOryza nivara31.2559.4286.95590forward
CNT30603622Saccharum spontaneumOryza punctata28.5580.3387.01539forward

Expression of CNT30459979

Peptides detected in this lncRNA

>peptide 1 (98 aa)
MCNHQQSLEEDRSFLLVQPSHAHLKSNNRLLRVLSGVVDVPLLPRLCRITNHISITTRPEATKIAIQEGNLISKVLVRGRLCIREYECPTGVFNCSKW*

>peptide 2 (89 aa)
MVHRARSRTESIWARESARSPLPLGSAKTGASEKLISRRFSYPSNPIAETGGGAAATCRTAIVSEQDDRQPGEEDRKWFLEIFWSLESS*

>peptide 3 (32 aa)
MGTLLTVADKANHLELFIANISMCHITIAQVM*

>peptide 4 (58 aa)
MGRQTGLTQIRRKSQSPHLRARTQWCTVQGREQSQSGHARVHGVPFHWGQRRQVPQRS*

>peptide 5 (81 aa)
MNGRESTAMNSIHGVATGLKIEVTDLHLWDNVRDTRELGHLLSTRCVTISRVLKKTEAFFLSSPVMHISRVTTGSSGCSVA*

>peptide 6 (43 aa)
MNVPREYLTAASGNESSSASSRILGIASRSFVVPQVLITILYG*

>peptide 7 (45 aa)
MTDSRGRKTGSGFLKSFGHWKAASQRDFRKIKMKMQVVSKLLGWG*

>peptide 8 (32 aa)
SNCIKQKTLFRLIQFRNTIWVHCSLWQTKLTT*

>peptide 9 (29 aa)
QIVSNRRLYLDSYSSETQYGYTAHCGRQS*

>peptide 10 (32 aa)
MTASAFHLLDLSFLDLIHSISFPAGGIRLTTL*

Sequence

>CNT30459979
TTCAAATTGTATCAAACAGAAGACTTTATTTAGACTCATACAGTTCAGAAACACAATATGGGTACACTGCTCACTGTGGCAGACAAAGCTAACCACCTAG
AGCTCTTTATTGCAAATATAAGCATGTGCCACATCACAATAGCACAGGTTATGTAGCATAAATAATCTGGCTTGGCTGCTTCACAAGATAACCAGGGGCA
GCAACTCTAAATCTGATTTGTCGTCAACCTTCAGCATAGAGCATGACGGCATCAGCATTTCATCTTCTTGACCTCTCTTTCCTCGATCTTATCCACAGCA
TCAGCTTCCCAGCAGGGGGCATCAGGCTCACCACTCTCTGAGCCATTCTTGACAATGTCACCAGCGAAGTCATGCAGGACTGACCTCGGCGAACCAGGGG
TGGTTTCACCCGTAGCAGTGAAGCTCTGATAGATGAGCAAGCCACCAGACGGAAGCACCTGCTCAACCGTGTTGCTGCAGGCATAGGCCTCAGCATCCAG
TTTCTTCCCCCAGGTCTTTGCGTTGTCCCGCTCACCGAAGATAGTCACGGCAACAGAGAACTCAGCTGGGCCAAAGCACCTCAGCACCCTCTTAACCAGG
TCACCATAAGACAGAGAGCCCGGGTTGAAGCCCATGATCTCGTAGCTTGCATAGCTGAAGCCGTCCTCTGGGTCACATGAATGGTCGAGAAAGCACGGCC
ATGAACAGCATTCATGGAGTAGCCACAGGGCTCAAAATCGAAGTCACAGATCTCCATCTCTGGGATAATGTCCGAGATACCAGAGAGCTTGGTCATCTCC
TTAGCACACGATGTGTAACCATCAGCAGAGTCTTGAAGAAGACAGAAGCTTTCTTCTTGTCCAGCCCAGTCATGCACATCTCAAGAGTAACAACAGGCTC
CTCAGGGTGCTCAGTGGCGTAGTAGACGTGCCACTTCTGCCCAGGCTTTGCAGAATCACCAATCACATAAGCATTACCACCAGACCTGAGGCCACCAAAA
TAGCGATTCAGGAAGGCAACCTCATCAGCAAAGTTCTTGTGCGGGGAAGGCTGTGCATCAGGGAATATGAATGTCCCACGGGAGTATTTAACTGCAGCAA
GTGGTAACGAGAGCTCTTCAGCAAGCTCAAGGATCCTCGAATAGCGAGCAGAAGCTTTGTAGTCCCACAGGTCTTGATCACCATCTTGTATGGGTAGACA
AACAGGCTTTGCAGAATCACCAATCACATAAGCATTACCACCAGACCTGAGGCCACCAAAATAGCGATTCAGGAAGGCAACCTCATCAGCAAAGTTCTTG
TGCGGGGAAGGCTGTGCATCAGGGAATATGAATGTCCCACGGGAGTATTTAACTGCAGCAAGTGGTAACGAGAGCTCTTCAGCAAGCTCAAGGATCCTCG
GAATAGCGAGCAGAAGCTTTGTAGTCCCACAGGTCTTGATCACCATCTTGTATGGGTAGACAAACAGGCTTGACTCAGATAAGACGTAAGAGTCAAAGTC
CTCATTTGAGAGCTCGGACACAATGGTGCACCGTGCAAGGTCGAGAACAGAGTCAATCTGGGCACGCGAGAGTGCACGGAGTCCCCTTCCATTGGGGTCA
GCGAAGACAGGTGCCTCAGAGAAGCTGATCTCAAGGCGCTTCTCATATCCCTCAAACCCAATCGCAGAGACAGGGGGAGGGGCAGCAGCAACTTGCAGGA
CTGCCATTGTTTCAGAGCAAGATGACAGACAGCCGGGGGAGGAAGACAGGAAGTGGTTTCTTGAAATCTTTTGGTCACTGGAAAGCAGCTAGCCAGAGAG
ATTTTAGGAAGATCAAAATGAAAATGCAGGTGGTTTCTAAGCTACTAGGATGGGGCTGACGAGAGAGCTATCAAGATGGCTTCCTCGC