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Detailed information on CNT30459776


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30347102Saccharum spontaneumEragrostis tef21.6312.0892.12165forward

Expression of CNT30459776

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MCLPTTSRLPCSWGLLLLVRFNIPVLPDPQPFLLCLLLELFQVLESCLPLPSVPSLASFKPGKPF

>peptide 2 (63 aa)
GLPGLKEARDGTLGRGRQLSRTWNSSRRRQRRKGCGSGSTGMLNRTRRSRPSCKEAWRSSVDT*

>peptide 3 (88 aa)
LARLERSKRWDTRERKTALQNLEQFQEKAKKERLRIWQYGDVESDEEEQAQLQGSLEVVGRHIRKGCSLACYESFGQPQMWDSAVSYR*

>peptide 4 (72 aa)
MPDCSLSLCVYRRPPGFLAAGACSSSSDSTSPYCQIRSLSFFAFSWNCSRFWRAVFLSLVSHLLLLSSRASPS

Sequence

>CNT30459776
GGCTTGCCCGGCTTGAAAGAAGCAAGAGATGGGACACTAGGGAGAGGAAGACAGCTCTCCAGAACCTGGAACAGTTCCAGGAGAAGGCAAAGAAGGAAAG
GCTGCGGATCTGGCAGTACGGGGATGTTGAATCGGACGAGGAGGAGCAGGCCCAGCTGCAAGGAAGCCTGGAGGTCGTCGGTAGACACATAAGGAAAGGC
TGCAGTCTGGCATGCTATGAAAGTTTTGGACAACCCCAAATGTGGGACTCTGCCGTGAGTTATAGATGAAAACGTAGACTGAGGGGGTACCTTATTTATT
CGGTTAGAAAAGAGAACTTAGCGAGGCGAAACTTTCTCGGTTTGAGCACTTTTGATATTCCGTTTTTACATCAGCTTATAAGCTGATGTAAAAACGGAAT
ATCAAAAGTGCTCAAACCGAGAAAGTTTCGCCTCGCTAAGTTCTCTTTTCTAACCGAATAAATAAGGTACCCCCTCAGTCTACGTTTTCATCTATAACTC
ACGGCAGAGTCCCACATTTGGGGTTGTCCAAAACTTTCATAGCATGCCAGACTGCAGCCTTTCCTTATGTGTCTACCGACGACCTCCAGGCTTCCTTGCA
GCTGGGGCCTGCTCCTCCTCGTCCGATTCAACATCCCCGTACTGCCAGATCCGCAGCCTTTCCTTCTTTGCCTTCTCCTGGAACTGTTCCAGGTTCTGGA
GAGCTGTCTTCCTCTCCCTAGTGTCCCATCTCTTGCTTCTTTCAAGCCGGGCAAGCCCTTCCT