Detailed information on CNT30459719


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30301196Saccharum spontaneumTriticum aestivum33.078.3787.9583forward
CNT30658545Saccharum spontaneumTriticum dicoccoides31.8717.6688.7580forward
CNT30134722Saccharum spontaneumLolium perenne26.293.887.8866reverse complement
CNT30722600Saccharum spontaneumTriticum spelta31.8718.186.2580forward
CNT30366487Saccharum spontaneumSorghum bicolor26.6915.6595.5267forward
CNT30149913Saccharum spontaneumBrachypodium distachyon30.282.8790.7976forward
CNT30104062Saccharum spontaneumOryza rufipogon25.911.3293.8565forward
CNT30581716Saccharum spontaneumEchinochloa crusgalli50.210.4288.1126reverse complement
CNT30498933Saccharum spontaneumDigitaria exilis27.895.1591.4370forward
CNT30557231Saccharum spontaneumPanicum hallii33.075.4386.7583forward

Expression of CNT30459719

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MVGGPPSHCAIYRGGGRPAQDTRFTSAATPHRYSRSRSEKGRSQ*

Sequence

>CNT30459719
TGTTAGGTTTTGATCTCCCACCATTAGGCCCAACGGCCTTTTGGGCCTTGTTTCTCGCGCCCTGATCGGGGGCGCCCAACCCTATATGGTTGGTGGGCCC
CCGTCACACTGCGCTATATATAGAGGTGGGGGCCGGCCGGCTCAGGACACGAGGTTCACCTCAGCCGCCACTCCCCACCGATATTCTCGATCCCGATCTG
AGAAGGGGCGCAGCCAGTGACGGGAAGCCGCCACCGTCTTCACTGCGCCAC