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Detailed information on CNT30459528


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691178Saccharum spontaneumOryza sativa24.3126.2195.61114forward
CNT30524100Saccharum spontaneumSetaria italica29.4226.2994.2138forward
CNT3067337Saccharum spontaneumLeersia perrieri17.0625.089580forward
CNT30583753Saccharum spontaneumEchinochloa crusgalli33.2633.4896.79156forward
CNT30116481Saccharum spontaneumOryza nivara25.1619.8396.61118forward

Expression of CNT30459528

Peptides detected in this lncRNA

>peptide 1 (38 aa)
TTVKYAQAQHDTSLHTVKFFWYTAGEETKVLRFLLLYV*

>peptide 2 (31 aa)
MGSSQSRQKSARSSTQKMNAAFSCDRARARLA

Sequence

>CNT30459528
ACTACAGTCAAATATGCACAAGCACAACACGACACTAGCTTGCACACCGTAAAATTCTTCTGGTACACAGCAGGAGAAGAAACAAAAGTCCTGCGCTTTC
TGCTCTTATATGTTTAACCGAGATCAGGGACGATGAAGTAGTCCTCGTCGTCGGTGACTTCGATCCGGGCCTTCTTGCTCTGGCGCACCCCGGCGCCGGC
AGCGGCTTTGGCCGGCCTGTAGTACGCCGCGTCGTTCGCGGCCTGGAATCCGAAAAGCTCCGGGACCTCCGCCAACGTCCTGCCGGCCTTAGGCGGAGGC
GGAGGCGAAGCCGACGCGGATGCCGGTGGCGAGGTAGCGCTGGTGGTTCCCGGAGAGCGTGCCCGGGACGTGGATGGGCTCGTCGCAGTCCCGGCAGAAG
AGCGCCCGGTCCTCCACGCAGAAGATGAACGCCGCTTTCTCCTGCGACCGCGCGCGAGCAAGGTTAGCT