Detailed information on CNT3045941


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30499788Prunus dulcisCoffea canephora6.4722.5310073reverse complement
CNT30611088Prunus dulcisArabis alpina6.2920.9498.5971forward
CNT30653503Prunus dulcisRosa chinensis7.5433.697.6585reverse complement
CNT30214655Prunus dulcisHelianthus annuus6.7435.0210076reverse complement

Expression of CNT3045941

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MEQEGKKIWAKGAFRESNSGPLAPKARIIPLDQMPSQ*

>peptide 2 (38 aa)
MYMYFWLKWNKKEKKFGQKGHSENRTRDLSHPKRESYH*

>peptide 3 (78 aa)
AESRAHSEISKIPFGFKAPFQLKTSKTHHPKEIRKSHSCLKLKLCTNSNCRIPEFSFPFSSVCSFFSIFGQPTFFLVR*

>peptide 4 (42 aa)
KQSPEPTVKYQRFLSALKLLFSSKLQKPTTQKKFENLIHVLN*

>peptide 5 (40 aa)
MNPLLEERYRRQKRGAFRESNSGPLAPKARIIPLDQMPSQ*

Sequence

>CNT3045941
AAGCAGAGTCCAGAGCCCACAGTGAAATATCAAAGATTCCTTTCGGCTTTAAAGCTCCTTTTCAGCTCAAAACTTCAAAAACCCACCACCCAAAAGAAAT
TCGAAAATCTCATTCATGTCTTAAATTAAAACTCTGCACAAACTCAAACTGCAGAATCCCAGAATTTTCTTTTCCCTTCTCCTCTGTGTGTTCTTTTTTC
TCAATTTTCGGTCAGCCCACCTTTTTTCTTGTGCGTTGAAGTTGATGATGGGAAAGATCAAGACTTCTTTGCAAACTGCAAACTTAGCTCAGGTGAGAAA
AAGGTGTCTTATTTGGGTTTCATAATAACAGTTGCTTCTCCTTCATCATGCCTTTTCGTTATTTATTTATTTTTATTTTTTTTGGTGATATTGCAATTAA
CAAAGTAATTATTTTTTAAAATAGCATAGTTTTAGAGTAATTTGAAGATTGAATCCTCTGTTAGAATTCTGACCCCAAAAAAAATGAATCCTCTGTTAGA
AGAAAGATATCGCCGACAAAAAAGAGGGGCATTCCGAGAATCGAACTCGGGACCTCTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTCA
CAATAGCAATGAATACCTGCAAATGCTAATTATCTTTATCTAGGATTGGTTTGCTTACAATTAAGTATTGACAGAAATCTGCATAAGTATTGATAAAATG
TTACAAGTGGTCCATTTTGTGAAAGCACCTTTGGACCCGACCTTGTATTAGTGGCATTTCAAGAATTGAAAACTCTTCATCTTTTGCATCAAAATCAAGA
GGAGTATGTTGCATAGATCACATTTTGTTGGCTTTAGCTGATTGAGTGATTTCAATAACACATGATTTCAATAAAGTGGTTGAGCAATCATGTAGAAGGA
TACATTATGCGATTATGTACATGTATTTCTGGCTGAAATGGAACAAGAAGGAAAAAAAATTTGGGCAAAAGGGGCATTCCGAGAATCGAACTCGGGACCT
CTCGCACCCAAAGCGAGAATCATACCACTAGACCAAATGCCCTCACAATAGCAATGAATACCTGCAAATGCTAATTATCTTATCTAGGATTGGTTTGCTT
ACAATTAAGTATTGATAGAAATCTGCAT