Detailed information on CNT30459269


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 3e-45

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30227115Saccharum spontaneumHordeum vulgare12.9945.7184.38128reverse complement
CNT30441953Saccharum spontaneumAegilops tauschii19.761.9880.93194forward

Expression of CNT30459269

Peptides detected in this lncRNA

>peptide 1 (42 aa)
SSPLKLLLLRSMVVRFVQQPSDDGSCPDMLLLPKWSSANPLS*

>peptide 2 (43 aa)
MELRQSLELTYIIWDVTNEFVASKIKCSQIPDIDNVCTIKYTL*

>peptide 3 (72 aa)
MPSHLQQSVPPCHDLARPASFESPASNWRREASSCSVQELVGVAKEISSTRTRPRQGMVNLLLYFLYGKWSAC

>peptide 4 (60 aa)
MTWLGRHPLRAQQVIGGERPPPAPCRNLWGWPRRSVAQEQGQDKVWLICCCISCMENGVPA

>peptide 5 (89 aa)
MLQKNVGICPAKLLLLALSATRFSIAVHAVDVNCPVNMLLEMLSTCRGWPGVEDGHSCSSPLSWLKLTSRTMMLLDDNNSSGRSPDNKF*

>peptide 6 (77 aa)
MNLLPPRSSVAKFLTLIMCAPSSTPCKLLFGRDRYSSKVALKSSLGSVPLRLLWPALSTFSTEQLPSSRGTVPLNWL*

Sequence

>CNT30459269
GAGTTCTCCACTGAAATTGTTGCTCTTGAGGTCGATGGTTGTGAGATTTGTGCAGCAGCCCAGTGATGATGGCAGTTGTCCTGACATGTTGTTGTTGCCC
AAATGGAGCTCCGCCAATCCCTTGAGCTGACCTATATAATCTGGGATGTGACCAATGAATTTGTTGCCTCCAAGATCAAGTGTAGCCAAATTCCTGACAT
TGATAATGTGTGCACCATCAAGTACACCTTGTAAATTATTGTTTGGAAGAGACAGGTACTCTAGTAAGGTTGCATTAAAGAGTTCATTAGGGAGTGTCCC
ATTGAGGTTGTTGTGGCCAGCCTTGAGCACTTTCAGCACGGAGCAGTTACCAAGCTCTAGGGGGACTGTGCCACTGAATTGGTTGTAACTGTAATCAAGG
ACAGCCAAAGATGGAGATATGTTACAAAAAAATGTTGGTATCTGCCCAGCAAAGCTGTTGTTGCTGGCGTTGAGTGCAACCAGATTCTCCATCGCTGTCC
ATGCTGTGGATGTAAACTGCCCTGTAAACATGTTGCTTGAGATGTTAAGTACCTGTAGAGGTTGGCCAGGGGTTGAAGATGGCCACTCGTGCAGCTCTCC
ACTGAGTTGGTTAAAGCTGACATCAAGGACAATGATGCTGTTGGATGATAACAACTCAAGTGGCAGATCACCGGACAACAAGTTTTAGGACAAGTTAAGC
TGCTGCAAGCCTGCCTCTAGATGCCAGAGAGACTTCAATAACTGTCCTGTTTCCGTTGCAGGTGATGCCTTCCCATTTGCAGCAATCTGTGCCTCCCTGC
CATGACTTGGCTAGGCCGGCATCCTTTGAGAGCCCAGCAAGTAATTGGAGGAGAGAGGCCTCCTCCTGCTCCGTGCAGGAACTTGTGGGGGTGGCCAAGG
AGATCAGTAGCACAAGAACAAGGCCAAGACAAGGTATGGTTAATCTGCTGCTGTATTTCTTGTATGGAAAATGGAGTGCCTGCAT