« Back to Saccharum spontaneum search


Detailed information on CNT30459266


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CG83|UBIQP_HORVU, E-value = 1e-79

BLAST vs NONCODE:
NONSTUT000620, E-value = 5e-37

Results of reciprocal BLAST search (potential orthologs)
nothing found

Expression of CNT30459266

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVMVLPVNVLTKICMPPLRRSTRWRVLSFWML*

>peptide 2 (42 aa)
MTLRAKSEDSCFNFWNQDWKACCVFSNVSVRGKEPCCLLQLM*

>peptide 3 (73 aa)
MEVHQRAPDRRRYSSSLNDPWLTDHHGDGAPGGGCSPSGCCSQRGYGHPPAACQRRSDAAGLGGYPPCPGSSP*

>peptide 4 (46 aa)
MNTSQTNLSKTTSKLSSNITTYSRFKPSQQFWVEHTRTSCPGQPVH*

>peptide 5 (66 aa)
MLCILQCFGERERTLLSTSVDVIKLLSCNWMLLSPENIMITSNLLSCKPEPKTELDRIKLPSSKKR*

>peptide 6 (35 aa)
MITETLILQKLTVVKKLTILIRVIRYCINLDHLNK*

>peptide 7 (30 aa)
MNYDHRNTDPPETYRCEKTNHTYKSNKILY*

Sequence

>CNT30459266
CCGGCTGAAAAACACTGTTGACTGATTTGTTGTGAGAGAAAAATACTGTTCCGTCTGAAAAAGACGGATTATAAGTCGGATGAACAGGGCTATCATCTCG
ACCATATATGCGTTTCATTCCTCTGCGTTGAGTTAAGCATTACAATTGCATTACAGTTTGCAAATTTTTCTTGTGACATACTGTAAGATCGATCAACACT
TTGCAGAGGAAGAGGGAGTCGAGATTGGCAAGCATATGAGCAGCCAACGAGATTCTACAGTGCTCTTGGTGAGATAAAGAACCTTGTTGTCTACTATTTC
AGCTGATGTGATCAAGTTACTACTGTCTTGCAGCCACTTTGTCTCCAGAAAATTATAAAGCCACAGCCTCCAAATGAATTATGATCACAGAAACACTGAT
CCTCCAGAAACTTACCGTTGTGAAAAAACTAACCATACTTATAAGAGTAATAAGATACTGTATTAATCTGGACCACTTAAATAAATAATACTATTCTGCA
CAATCCAACACAATCTTTTGGATTTAGCAAGAATTAGCAATCAGAACCCAGTAACATAGCAACAAACTGTAAGCCAGACAACTAGGAACCTGGAGGTTTG
ATGAGCACCAGCCAAACAAATTTATCCTCGGTGGACAGCTAGGAACCTGGAGGTTTGATGAACACCAGCCAAACAAATTTGTCAAAAACAACCAGCAAAC
TTAGTTCAAACATCACAACTTATTCAAGATTTAAGCCATCACAACAGTTTTGGGTAGAACACACTAGGACAAGTTGTCCTGGACAACCGGTCCATTAAAC
CAAACAGTCTCAAGTCACGACTCATGACTTTGAGAGCAAAGAGTGAAGACAGCTGCTTCAATTTCTGGAACCAAGATTGGAAAGCATGCTGTGTATTCTC
CAATGTTTCGGTGAGAGGGAAAGAACCTTGTTGTCTACTTCAGTTGATGTGATCAAGTTGCTATCTTGCAACTGGATGCTACTGTCTCCAGAAAACATAA
TGATCACATCAAACTTGTTAAGCTGTAAGCCAGAGCCAAAAACTGAGCTTGACAGAATCAAGTTACCATCCAGTAAGAAACGGTAGATAGAGAACCTGGA
GGCCCAATTAACAGCAGCAAATCAAATTTGATCAGGCAAATATTAGGAGACATATAAACGAAAAAAACCATATTGAACACAAACTTTTTAAGTCCAAACA
TCAAACTTATTCATGATGAAGCCATACTGCTGCAGAACAGTTTAGGTATCACACACACAGGACACAACCGGTCCTTTAAACCAACTCAGTCACGACTCAT
GACACAAACCACAGATACTTAATAGACGACAACCACCATATGGAGGTACACCAGAGGGCACCAGACAGACGCAGGTACAGCAGCAGCTTAAACGACCCAT
GGCTTACTGACCACCACGGAGACGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCCAGCTGCTTGCCA
GCGAAGATCAGACGCTGCTGGTCTGGGGGGATACCCTCCTTGTCCTGGATCTTCGCCTTGACATTATCAATGGTGTCAGAGCTCTCAACCTCCAAGGTGA
TGGTCTTGCCAGTCAATGTCTTGACAAAGATCTGCATGCCACCCCTGAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCAAG
CGTGCGCCCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTGGCCTTGA