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Detailed information on CNT30459193


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT309847Saccharum spontaneumZea mays67.6744.786.33607forward
CNT30495950Saccharum spontaneumDigitaria exilis21.2915.0294.76191forward
CNT30556241Saccharum spontaneumPanicum hallii21.410.7793.23192forward

Expression of CNT30459193

Peptides detected in this lncRNA

>peptide 1 (65 aa)
ARSGYKGKARHPSGRTHIQPGDLESSSDFASSPSALVSPRGRRVSRCLSFASTATCWPRMALPSS*

>peptide 2 (62 aa)
SFRLQREGPAPFRAHPHPAGRFGIQLRFRFLSLRPGEPPRATCVPLPVLRFDGHLLASHGSA*

>peptide 3 (36 aa)
LVQATKGRPGTLPGAPTSSREIWNPAQISLPLPPPW*

Sequence

>CNT30459193
GCTCGTTCAGGCTACAAAGGGAAGGCCCGGCACCCTTCCGGGCGCACCCACATCCAGCCGGGAGATTTGGAATCCAGCTCAGATTTCGCTTCCTCTCCCT
CCGCCCTGGTGAGCCCCCGCGGGCGACGTGTGTCCCGTTGCCTGTCCTTCGCTTCGACGGCCACCTGTTGGCCTCGCATGGCTCTGCCTAGTAGCTAGTG
CCTCCTGCCAAGCGTCCAAGCTCCCGCTCGCCCGGCGGCCAAGCGCCGCGGCGTCTATATATCCAGCCAGATCCGCGCGATCTAGCTATCCCCGCTAATC
GCCGCACCCTGCCTCAACTTCTCTAGCTCACCCGCATCCCGGCTCGGCACGGCCTTCTCCTCGCACTTCCCTTCTCTGGTGTGATTGTATCTAGCCCCCA
TCATAACAATTCATCGGCAGCGGCGCGCCATCGTCGTCTCAGATTGATGCAAGGGGTGGTGACAAGCTAGAGGCAACAACTGCATATCTTGCAAGAAAAT
TGGTTTTCGAACCATACCGATAATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATGAACAAAAGCACAGGTT
ATGTTATCAGTGAACACATTGACACAAATTTGAACTGATATATGTTGATAACAGACGTGACGTTTAATTGGAATCTTGCAGCATGATACACACACAGCAG
CTCTTAGTATGTTAAGGTATTGCAGCGGGTACTGTTGTGCTACGATGTTGCAAGCAGACTCCATGAAGTCATAATAAGGTCGTAGAAGACTAGAAGGCAT
ATTTGAGGGCAGTTTCTGGCGTGTAAACTATCCAGCCTGTGGCATGGTACTTCGGAGTTTATGGGATGTTCTGCAACAGCACTAGAATTTTGACAAT