« Back to Saccharum spontaneum search


Detailed information on CNT30458825


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30109885Saccharum spontaneumOryza longistaminata11.1721.0988.7162forward

Expression of CNT30458825

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MDSLLKEVQRYQYVQKNCTMSSSRRTTPKLYILELIRS*

Sequence

>CNT30458825
GCAGTAGCTCCTCCCTCTCAAACCACAACCACCATCCTTGCGCCGTGACCTGGGATCCTGAGTTCATCTTCCTCGCGCCTTCGTGATGGATTCTTTACTC
AAAGAAGTACAAAGGTATCAATATGTGCAAAAAAACTGTACAATGAGCAGCTCAAGAAGGACAACTCCAAAGCTGTATATATTGGAACTTATTCGAAGCT
AGCCGTAGCGCAGTCAGGTTTTTGCATGAATATATACTTTCTGGAATTGTACCACTGAAGTTGTTCAACACTTCCCTTTAAACAAGTTGCTCGAGATGTT
AAGTACCTGTAAAGGCTGTGGTTGAAGCTGACGTCGAGGACGATGATGCTGCTGGATGACACCAATCCGAGCGGAAGGCCACCGGACAGTGAGTTGTAGG
ACAAATTTAGGTATTGCAGGTCGGTAAGGTTCCCAAGGGACTGCGAGATATGCCCCTCAACGCCCCTGTAAGGCAGCGAGACAGCACAAATTTGACCGAA
TATACATCCTGCCTTTCTATCTGAGATCAGGATATGGCATCACTTGTGCTACCAC