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Detailed information on CNT304588


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672379Zea maysSetaria viridis25.1972.3893.85325forward
CNT30520774Zea maysSetaria italica26.7430.6790.72345forward
CNT30533956Zea maysEucalyptus grandis12.0222.2184.52155forward
CNT30629841Zea maysVigna unguiculata13.4129.5781.5173forward
CNT30182270Zea maysSecale cereale25.6659.9687.92331forward
CNT30222663Zea maysHordeum vulgare20.2351.5886.21261forward
CNT30564216Zea maysActinidia chinensis8.9952.0287.07116forward
CNT3084712Zea maysVigna radiata6.6730.3984.8886forward
CNT30437582Zea maysAegilops tauschii8.9935.1593.1116forward
CNT30247486Zea maysAvena sativa13.0228.1994.05168forward
CNT30683149Zea maysTriticum urartu12.9537.793.41167forward
CNT30344815Zea maysEragrostis tef18.2954.8888.14236forward
CNT30582252Zea maysEchinochloa crusgalli13.4126.2595.95173forward
CNT30556884Zea maysPanicum hallii13.4123.8394.8173forward

Expression of CNT304588

Peptides detected in this lncRNA

>peptide 1 (71 aa)
STNPGAGSITTSGRLLPRPSLALASILSTKGRSTSPKTEELMYYPGAFLPYLALHQPLRHGQPPCQVGLGT*

>peptide 2 (45 aa)
MTCVTLHHSSGPRHATSFHWLVRYSDQDNDNMILGGRLLPKMAFH*

>peptide 3 (48 aa)
MASGRTDKHFTVFTSTAILTLASINPRSLRSFPLPTYLYSLLQAFRCK*

>peptide 4 (57 aa)
MSHTTCHIVYRGSASPPHRTRPTLALLAALLEAINRGGPWLQAGQTNTSRFSPPQRY*

>peptide 5 (39 aa)
MYPRCSSLLKWHTFARREEDRRRSYIIYMHLYEFVFYLK*

>peptide 6 (41 aa)
RQRILEQARSRPQVDFCLARAWLWPRYYQRKGVLHHRKQRS*

Sequence

>CNT304588
CGTCAACGAATCCTGGAGCAGGCTCGATCACGACCTCAGGTAGACTTCTGCCTCGCCCGAGCCTGGCTTTGGCCTCGATATTATCAACGAAAGGGCGTTC
TACATCACCGAAAACAGAGGAGCTGATGTATTACCCGGGAGCTTTTTTGCCATACTTAGCACTGCACCAACCACTTCGGCATGGGCAACCTCCCTGTCAG
GTAGGCTTGGGTACATAACCGAGCCCTCGGCCCCGACCTTGGCTCTCTGCAGGAACCGAACGTCTCCACCGGCCAAAAGTCAACAGCAAGTACATGTCCC
ATACCACATGCCATATCGTCTACAGGGGCTCAGCCTCGCCTCCTCACCGTACGCGACCAACACTGGCACTCTTGGCAGCCCTCCTTGAGGCTATAAATAG
GGGGGGTCCATGGCTTCAGGCAGGACAGACAAACACTTCACGGTTTTCACCTCCACAGCGATATTGACACTTGCTTCAATCAACCCTAGGAGCTTGAGAT
CCTTTCCTCTCCCGACCTACTTGTACTCCCTATTGCAAGCATTTAGGTGCAAGTAATATAAGTCTCACCATCACTCTGCTGGAAGTAGGGCTTTCTCTCG
CCCAAACTAGGATAAATGACTTGTGTGACCTTACATCACTCATCTGGGCCAAGGCACGCAACATCATTTCACTGGTTGGTGAGATACTCGGATCAAGACA
ACGACAATATGATACTAGGAGGTCGACTTTTACCTAAAATGGCATTTCACTAGCTGGTTTGAAGGGGGGGTCATGATGCATCCAAATCAAAGTAAAAAAA
ATTAACAGTTCCAAGTTACATCCCAATCCATCCATGTGCAGAGGAATTGCATGTATCCACGATGCTCGTCACTGCTGAAATGGCATACCTTTGCACGCAG
AGAGGAGGATCGGAGGCGGAGCTATATTATATATATGCATCTTTATGAATTTGTATTCTACTTGAAGTAGTAGGGGAGGTCGAGCACGTAGAGGAGGAAG
TATGCCCAGAGCACGCCGGAGATACCACCGAAGAAGAACCCTCCGGTGAACTTGGCCCAGCCGTCGGCGGTCTGCAGCTTGTCGGCCTCCTTCTTCCGGC
CGGTGAGCGTGAGCGAGGTAGCCGTGGGCGAGGCCGACCTCGACGCCCCGCAGCAGCGGGCTCACGGCGGTGCGGTAGGCCGGCAGGTTGGAGAGGTACC
ACGCGATGAGCGGGCTGGAGGTGACGGGCGTCTCCAGGCTGCCGATGAACGGGTCGCCGTTGATGGGCTGCACCACCTGGTACGTTGCCT