Detailed information on CNT30458448


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30549182Saccharum spontaneumIpomoea triloba11.6725.5887.0177forward
CNT30302575Saccharum spontaneumTriticum aestivum21.8239.3497.22144forward
CNT30137282Saccharum spontaneumLolium perenne18.9429.1486.4125forward
CNT30683585Saccharum spontaneumTriticum urartu19.8520.6389.31131forward
CNT30351207Saccharum spontaneumEragrostis tef20.7621.0188.32137forward
CNT30364451Saccharum spontaneumSorghum bicolor46.5266.4585.34307forward
CNT30100365Saccharum spontaneumOryza rufipogon23.1825.7193.46153forward
CNT30575092Saccharum spontaneumOryza barthii20.9117.9293.48138forward

Expression of CNT30458448

Peptides detected in this lncRNA

>peptide 1 (86 aa)
MQWPLPRNKPTRHGELDGGKAWTPQGFQRMVEKLGRLRASRGWWCRRSWRSPRRGPCWTPAGGPRSSPCRSAPSPGPRAPTRHGWQL

>peptide 2 (70 aa)
MEEKLGRLRASRGWWKSLDASGLPEDGGVGDHGGHHVGVHVGRRPAVLEVALAVLLRLPAHAHRRATVGNS

>peptide 3 (63 aa)
MHREVLIGSTSVVRPLLEDYTGSKKKKKKKTGGDHPSGRTAWNGSGKRQSNNVFCVLFWHTTT*

>peptide 4 (51 aa)
MATAAEQTDTTRRAGWRKSLDASGLPEDGGKAWTPQGFQRMVVSAIMEVTT*

>peptide 5 (30 aa)
MEVGSVKATMFFVFCFGTPRPDPDLAKMQY*

Sequence

>CNT30458448
ATGACAATGATGCCGCCCACTAACGATTCCCTCCCTTATCAAATCAGCAGCTAAGGAAAGCCACAAATATTGGAGGGCGTAGGAAAGCGATCACTTATAC
AATGCATAGAGAGGTACTGATAGGTAGCACAAGTGTGGTACGGCCATTATTGGAGGATTACACAGGAAGTAAGAAGAAGAAGAAAAAGAAGACAGGAGGA
GACCACCCAAGCGGACGGACGGCATGGAATGGAAGTGGGAAGCGTCAAAGCAACAATGTTTTTTGTGTTCTGTTTTGGCACACCACGACCTGACCCAGAT
CTAGCTAAAATGCAGTACTAGTAATAGAGTTGTATAAGCAAACGGAACGGAAGGAACAATTTTTGCGCAATCGCTGGACGGACCGGACGGACCCTGCAAT
GCAATGGCCACTGCCGCGGAACAAACCGACACGACACGGCGAGCTGGATGGAGGAAAAGCTTGGACGCCTCAGGGCTTCCAGAGGATGGTGGAAAAGCTT
GGACGCCTCAGGGCTTCCAGAGGATGGTGGTGTCGGCGATCATGGAGGTCACCACGTAGGGGTCCATGTTGGACGCCGGCCGGCGGTCCTCGAAGTAGCC
CTTGCCGTTCTGCTCCGTCTCCCGGCCCACGCGCACCGACGCGCCACGGTTGGCAACTCC