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Detailed information on CNT30457622


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30682746Saccharum spontaneumTriticum urartu21.7123.784.67137forward
CNT30341910Saccharum spontaneumEragrostis tef58.9585.3283.33372forward
CNT30363435Saccharum spontaneumSorghum bicolor100.7934.8991.82636forward
CNT30107539Saccharum spontaneumOryza longistaminata20.295.4781.25128forward
CNT30574797Saccharum spontaneumOryza barthii20.2910.5881.25128forward
CNT30550410Saccharum spontaneumOryza brachyantha14.923.8682.9894forward

Expression of CNT30457622

Peptides detected in this lncRNA

>peptide 1 (64 aa)
MSKGVLMMLLVATVILLCLPLVLPPLSPPPMFLLFIPVVMMLLLFSLVLFPSHHCAYSSSAFTQ*

Sequence

>CNT30457622
CCAGCTTCCCAGTTCATCCATTGGGTACAGCATTTTTCTCACACATATAACAAATTCCTCACAACAAACATGAAAGCCTAGAAAAAGACTGAAGCCGGAC
AGCCATTGGAGGAGGCAGAAGTTCCATCACAGCGCAGGCCAGTGGGGCGACGATGAGCAAGGGAGTACTGATGATGTTGCTGGTGGCGACAGTGATCCTC
CTGTGCCTGCCATTGGTGCTGCCACCGCTTTCGCCACCACCGATGTTCCTTCTCTTCATCCCTGTGGTGATGATGCTCCTGCTCTTCTCCCTGGTTCTCT
TCCCGTCTCACCACTGTGCATACTCTTCTTCGGCCTTCACTCAGTAACAACAATGTCTGACGGCCAGGTGGCCCTCAGGAGAACTTCTGTTCTACCTTTC
AAGCCCAGATGACGCACCATCTTGGAGTGAAGGGTGATAAACCAATGAAGAAATGAATGCTATCTAGTCATTCTTGTTGTGGAAAGAATTTCCATAATGT
TGGGCCTGTGGTAGGCTGTATAGTAGTAAGCCAGCAGTGAGTACCGCTGCACCCGCAACAAAGCCAGGTGGCAGAGATGATGCCACACCAATATACGGGA
GTGGTAGGGTGAATGCATAGATGGACAGTGG