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Detailed information on CNT30457601


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696588Saccharum spontaneumOryza sativa28.3451.9286.77189forward
CNT30678209Saccharum spontaneumSetaria viridis29.9934.1390.5200forward
CNT30522419Saccharum spontaneumSetaria italica36.7330.9789.8245forward
CNT30244755Saccharum spontaneumAvena sativa27.2929.482.97182forward
CNT30150234Saccharum spontaneumBrachypodium distachyon28.3445.9982.54189forward
CNT30103777Saccharum spontaneumOryza rufipogon22.9453.586.93153forward
CNT30579728Saccharum spontaneumEchinochloa crusgalli36.2831.5591.32242forward
CNT30498141Saccharum spontaneumDigitaria exilis35.5329.4491.14237forward

Expression of CNT30457601

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MYCPAGLSSNLPYVDAACRISDAAPATSFLSTFSALFCWNTDAAASATSLPLENRLPELLPSAIG*

>peptide 2 (78 aa)
MELRSSSIYLRKPWAILNSPPAAPPPALSSPPPCFPTSCSAPFTTSPRPNPSDDLPPSSAAGAGCSAPAACPVLNSFR*

Sequence

>CNT30457601
AGTACATAACAGACACACAGCTACACGTTGGCCAGAGAAATCAAGTGCAGTGCGTGGATGGAGCTTAGATCGAGTTCCATCTACTTGAGGAAGCCCTGGG
CCATCTTAAACAGCCCACCGGCGGCGCCGCCGCCGGCGCTTTCCTCCCCGCCGCCCTGCTTCCCCACGAGCTGCTCAGCGCCCTTCACGACGTCGCCGAG
GCCAAACCCCTCCGACGACTTGCCGCCTTCATCCGCGGCCGGCGCAGGCTGCTCGGCGCCGGCGGCGTGTCCCGTGCTGAACTCCTTCAGGTAGCCCTCG
GCCTTCTCGATGTACTGCCCGGCCGGCTTGTCCTCGAACTTGCCGTACGTGGACGCCGCGTGCAGGATCTCGGACGCCGCGCCGGCGACCTCCTTCTTGT
CGACGTTCTCCGCGCTCTTCTGCTGGAACACCGACGCGGCGGCCTCCGCGACCAGCTTGCCGCTGGAGAACAGGTTGCCGGAGTTGTTGCCCTCTGCCAT
TGGATAGCTTCTCTGCTTGCTCAGATCTTTTTCGCTTCAGACTTCAGAGCTGCGGTGAGTGAGGCGCAGATAGTGAGGACGCCACTAGCTAGCTACTATC
TAGCTTTATAGGCGAAAGAGGATTAGAGGAAGAGCTGGGCACTAGAACGATCGAAAGCTACTTTTCT