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Detailed information on CNT30457532


BLAST search results

BLAST vs Swiss-Prot:
sp|P08437|H3_VOLCA, E-value = 1e-26

BLAST vs NONCODE:
NONORUT005433, E-value = 1e-57

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674998Saccharum spontaneumSetaria viridis62.532.8999.2125forward
CNT30547549Saccharum spontaneumIpomoea triloba9123.5180.22182forward
CNT3069241Saccharum spontaneumQuercus suber98.544.7785.79197forward
CNT30613891Saccharum spontaneumArabis alpina22.511.1791.1145forward
CNT306284Saccharum spontaneumZea mays98.592.0686.8197forward
CNT30358910Saccharum spontaneumLactuca sativa7922.9381.01158forward
CNT3099660Saccharum spontaneumOryza rufipogon5825.6196.55116forward

Expression of CNT30457532

Peptides detected in this lncRNA

>peptide 1 (48 aa)
GDALGVDGAEVGVLEEPDEVGLGRLLQRGDGGALEAEVGLEVLGDLPH*

Sequence

>CNT30457532
ATGGTGACGCGCTTGGCGTGGATGGCGCAGAGGTTGGTGTCCTCGAAGAGCCCGACGAGGTAGGCCTCGGCCGCCTCCTGCAGCGCGGCGACGGCGGAGC
TCTGGAAGCGGAGGTCGGTCTTGAAGTCCTGGGCGATCTCCCGCACTAGGCGCTGGAACGGCAGCTTACGGATCAGCAGCTCCGTGCTCTTCTGGTATTT