Detailed information on CNT3045720


BLAST search results

BLAST vs Swiss-Prot:
sp|P92999|GL118_ARATH, E-value = 4e-91

BLAST vs NONCODE:
NONTPRT002878, E-value = 5e-19

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515168Prunus dulcisJuglans regia46.564.1484.59279forward
CNT3019818Prunus dulcisCitrullus lanatus25.3351.3581.58152forward
CNT3071407Prunus dulcisQuercus suber30.1777.0280.11181forward
CNT30382054Prunus dulcisManihot esculenta13.526.9183.9581reverse complement
CNT30631896Prunus dulcisVigna unguiculata4744.279.79282forward
CNT30638659Prunus dulcisCapsicum annuum22.3320.2484.33134forward
CNT3090146Prunus dulcisSolanum tuberosum22.3317.4783.58134forward
CNT30567662Prunus dulcisActinidia chinensis17.3334.4482.69104forward
CNT3061946Prunus dulcisArabidopsis lyrata1322.2284.6278forward
CNT30717911Prunus dulcisMalus domestica golden36.6727.0382.27220forward
CNT30155140Prunus dulcisPrunus persica31.3360.65100188forward
CNT30573105Prunus dulcisVitis vinifera59.3358.8480.06356forward
CNT30706383Prunus dulcisPrunus avium92.6788.5497.12556forward
CNT3031606Prunus dulcisTheobroma cacao17.8323.5288.79107forward
CNT3027612Prunus dulcisPopulus trichocarpa3512.3779.05210forward

Expression of CNT3045720

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRPIGNTNTSPLFNTLVNRRLPSPLDVTKPT*

>peptide 2 (60 aa)
MSHIELKMNEAYWEHKHISLVQHFGEQAIAITVGCDETNIECSFQDQKDFGGTRVSVRRV*

>peptide 3 (39 aa)
PFLLSAYNFLFFFFLLIVVVPELFLEIVNHLVVNLEGLG*

>peptide 4 (35 aa)
MGGLEPNTALAMVITPGFWLLSPAKATALTCPTLS*

>peptide 5 (34 aa)
MRAKDMPRVFSPSRLSTFTAVTFEPTGFFVFLGF*

Sequence

>CNT3045720
GGCCTTTTCTGCTTTCCGCATATAATTTTCTTTTTTTTTTTTTCCTTCTAATTGTTGTCGTACCAGAACTGTTTCTGGAGATAGTCAACCACCTTGTTGT
CAACTTGGAAGGCCTTGGTTAGAACATCAGGATTGATGGGAGGCTTGGAGCCAAACACTGCATTGGCTATGGTGATCACTCCTGGATTCTGGCTGCTAAG
CCCAGCAAAGGCTACAGCGTTGACATGTCCCACATTGAGTTGAAAATGAATGAGGCCTATTGGGAACACAAACACATCTCCCTTGTTCAACACTTTGGTG
AACAGGCGATTGCCATCACCGTTGGATGTGACGAAACCAACATAGAGTGTTCCTTCCAAGACCAAAAGGATTTCGGTGGCACGAGGGTGAGTGTGAGGAG
GGTTTAGGCCATTTGGTGCAAAGTCTATGCGGGCTAAGGATATGCCGAGAGTGTTCAGTCCTTCTAGGTTGTCCACATTCACAGCTGTCACATTTGAACC
AACCGGATTTTTTGTATTTCTTGGATTTTGAAGCCCAGAAAAGAAGAAATCATTTGCATTGGCAAGCTTTGGATCCTTGCAGAATTTCCCATTCACAAAC