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Detailed information on CNT30457183


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LGE3|FLP1_ORYSJ, E-value = 1e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099658Saccharum spontaneumOryza rufipogon22.7436.7488.14194forward
CNT30574804Saccharum spontaneumOryza barthii14.324.0691.8122forward

Expression of CNT30457183

Peptides detected in this lncRNA

>peptide 1 (49 aa)
RTSIMVVTGTNDKCTVRRTSVINLEQLRTHHHSQTTPRTHTADGIYTRH*

>peptide 2 (34 aa)
MSYMWTEENLAKSAGREMRSRDPRLWNWYSAGSS*

>peptide 3 (47 aa)
MAYTHATDSDQLHTLSLTHCVEIKFSETCMRSTSCSTYSDPHKVTTN*

Sequence

>CNT30457183
CACGCACATCAATAATGGTGGTCACTGGCACAAACGATAAATGTACAGTCAGACGCACAAGCGTGATCAATCTTGAGCAACTACGTACACATCATCACTC
CCAGACGACACCACGCACACACACTGCTGATGGCATATACACACGCCACTGATTCAGATCAGCTCCACACACTGTCACTCACACACTGCGTCGAAATCAA
ATTTAGCGAGACATGCATGCGTAGTACTAGCTGCAGCACGTACTCCGATCCTCACAAAGTCACAACTAATTAACAAGCCCTCCATGGATGATACTGAGAA
ACTGATGAGATGATGCATGAAGCCAGCTAGCTAGCTAGCACATCAGCATATATAATCATCTGCAGAAAAGATCAGACGTCGACAACCCTGAAGGAGTCGC
GGTTCTTGACGACGATGTCGTACATGTGGACGGAGGAGAACCTGGCGAAGTCGGCGGGGAGGGAGATGAGGTCCAGGGACCCGCGCTTGTGGAACTGGTA
CAGCGCCGGGTCCTCGTAGTAGCGCTCCCACCCCAGCGCCCGGAGCTCCGACTCCAGCTCCGCGTACGACCGCACCACCTGCCCGCTCGGCGTGTGCACC
AGCGCCTTCCGCCGCCGCACCGCCTCGCCGCCCGCCGCCGAGCCGTTCTCCACCAGGCGCACCACGCCGTTCTTGAACACCCAAACGCCAGACATGGTGG
TGAATTGTTGATCGATTAGATGATGGTAGCGACCAACAGCTAGCTTAGCTACAAGTCGTTAGCAAAGCTAGCTAGCTAACTTGAGAGCGGGAGAGATGGT
TGGCGTTGCTGTTGCTCGGGAGTATTGGGGATGGATGGATGGATGGATGGATG