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Detailed information on CNT30457070


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8S8T4|UXS4_ARATH, E-value = 1e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30703138Saccharum spontaneumQuercus lobata57.5674.8180.36392forward
CNT30277485Saccharum spontaneumChenopodium quinoa21.4417.1280.82146forward
CNT3021362Saccharum spontaneumCitrullus lanatus26.7327.9681.32182forward
CNT3068683Saccharum spontaneumQuercus suber58.4480.8980.65398forward
CNT30289293Saccharum spontaneumTriticum aestivum18.842.1187.5128forward
CNT30539234Saccharum spontaneumBrassica napus59.6244.3781.53406forward
CNT30261302Saccharum spontaneumBrassica rapa56.9875.0581.96388forward
CNT30131528Saccharum spontaneumLolium perenne38.1856.489.62260forward
CNT30231964Saccharum spontaneumAnanas comosus25.5514.2683.33174forward
CNT30360575Saccharum spontaneumLactuca sativa39.0644.1181.58266forward
CNT30645151Saccharum spontaneumCannabis sativa22.6116.1685.06154forward
CNT3055709Saccharum spontaneumAmborella trichopoda23.7924.7783.95162forward
CNT30102778Saccharum spontaneumOryza rufipogon12.3333.291.6784forward
CNT30580197Saccharum spontaneumEchinochloa crusgalli85.6170.7592.11583forward

Expression of CNT30457070

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MMSHVAFAPREEVVHHDHAVAALHEPVHKVAPHEPGAARHEHPQRAPAQPQGHLAADGPAEGRVPGNGKVVESDRSGGFGRR*

>peptide 2 (29 aa)
VTYRVDIAPISFHLRVLEGITIDLTGACK*

Sequence

>CNT30457070
TTGTTACCTATAGGGTTGACATTGCCCCAATAAGTTTCCACCTGAGGGTGCTGGAGGGGATCACCATAGACCTCACTGGTGCTTGTAAGTAGGAACCTTG
CCCCAATCCTCTTGGCCAATCCAAGCATGTTCAGTGTCCCAACAACATTCGATATGATGGTCTTGATGGGGTTGTACTTGTAGTGCACGGGGCTGGCTGG
GCAGGCAAGGTGGTAGATCTGGTCGACCTCGAGCAGTATGGGCTCGACGACGTCGTGGCGGATCACCTCGAACCTGGGGTTCTGGAGATGATGAGCCACG
TTGCCTTTGCGCCCCGTGAAGAAGTTGTCCACCACGATCACGCTGTCGCCGCGCTCCACGAGCCGGTCCACAAGGTGGCTCCCCACGAACCCGGCGCCGC
CCGTCACGAGCACCCGCAGCGCGCGCCGGCGCAGCCCCAGGGGCACCTTGCCGCCGACGGACCCGCGGAAGGACGGGTGCCCGGCAACGGCAAGGTGGTT
GAATCCGACCGAAGCGGCGGGTTCGGACGGCGATGAGGTGGAGGGGGAGGAGAAGGTGAAGAGGGCGGCAGCGAAGAGCATGCCGGCGAGGGCGAAGACG
GGGCGGTGCTCGGCGGCGGCGTAGCGCGCGGCGCGGGAGAGCCAGGAGAGCGGCTTGGAGGGCTTCGGGGAGTACTCCCCG