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Detailed information on CNT30457014


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8VZC0|UXS1_ARATH, E-value = 2e-89

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30318541Saccharum spontaneumCorylus avellana53.2786.7879.85407forward
CNT30500451Saccharum spontaneumCoffea canephora23.0416.4982.39176forward
CNT30727603Saccharum spontaneumCorchorus capsularis18.3228.3485140forward
CNT30504810Saccharum spontaneumNicotiana attenuata23.1727.1982.49177forward
CNT30637312Saccharum spontaneumCapsicum annuum16.7529.7785.94128forward
CNT3098150Saccharum spontaneumSolanum tuberosum16.3625.5184125forward
CNT30182233Saccharum spontaneumSecale cereale53.465.5992.4408forward
CNT30222279Saccharum spontaneumHordeum vulgare39.0198.6892.62298forward
CNT30590847Saccharum spontaneumMusa acuminata45.2975.7182.95346forward
CNT30508626Saccharum spontaneumSolanum lycopersicum16.3636.9884125forward
CNT30143812Saccharum spontaneumMedicago truncatula21.8613.583.23167forward
CNT30246244Saccharum spontaneumAvena sativa53.450.1292.89408forward
CNT30661043Saccharum spontaneumTriticum dicoccoides22.5146.7490.12172forward
CNT30134072Saccharum spontaneumLolium perenne53.456.291.91408forward
CNT3066796Saccharum spontaneumLeersia perrieri50.2698.7192.97384forward
CNT30653881Saccharum spontaneumRosa chinensis35.0825.0982.84268forward
CNT30338563Saccharum spontaneumEragrostis tef52.8897.5891.09404forward
CNT30595456Saccharum spontaneumOryza meridionalis52.8870.8892.82404forward
CNT30355562Saccharum spontaneumLactuca sativa21.0727.6281.99161forward
CNT30424172Saccharum spontaneumPapaver somniferum19.1120.9286.99146forward
CNT3054595Saccharum spontaneumAmborella trichopoda26.5798.0782.27203forward
CNT30325711Saccharum spontaneumAsparagus officinalis32.8578.6885.26251forward
CNT30583952Saccharum spontaneumEchinochloa crusgalli53.489.4793.38408forward
CNT30497454Saccharum spontaneumDigitaria exilis48.6910093.55372forward
CNT30594668Saccharum spontaneumEragrostis curvula40.9792.8892.65313forward
CNT30336663Saccharum spontaneumCynara cardunculus21.0734.4883.85161forward
CNT3064271Saccharum spontaneumSelaginella moellendorffii35.2148.9180.3269forward

Expression of CNT30457014

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MLKGITINFTCASQQKPCTNSLCQTQHIQSSHDI*

>peptide 2 (73 aa)
MSAPRRTKRRRCSRRTYPIQERGPGRAGLAALEAGACADDGAWVGEDLWSCFMAGERGQAEAGAWLVTWYGGGL

Sequence

>CNT30457014
ACCTATAGGATTAACGTGCCCCCAGTATGACTCCTTCTGTGGATGCTCAAGGGGATCACCATAAACTTCACTTGTGCTAGTCAACAAAAACCTTGCACCA
ATTCGCTTTGCCAGACCCAACATATTCAAAGTTCCCATGACATTTGATATGATCGTCTTGATTGGGTTATACTTGTAGTGCACGGGCGACGCGGGGCACG
CGAGGTGGTAGATCCGGTCGACCTCAAGGAGGATTGGCTCGACCACATCGTGGCGGAGCAGCTCGAACCTGGGGTTCCGGAGGTGGTGCGCAACGTTCTC
CTTCCTGCCGGTGAAGAAGTTGTCGACCACGATCACGCTGTCCCCCTGCTCCAGGAGCCGGTCGACGAGGTGGCTGCCGACGAACCCTGCCCCGCCGGTG
ACGACGACGCGGCGCGGCGGCGGGCGGAAGCCGGCGGGGACACCGGAGCGGGCGGCGAAGGAGAAGAGCGGGCGGGCGTCGGGGAGGTGAGAGGACGGGG
AGAGCGAGAGGTAGGGCCGGAGGAGGAAGAAGGTGGAGGCGATGAGCGCGCCGAGGAGGACGAAGAGGAGGCGCTGCTCGCGGAGGACGTACCCGATCCA
GGAGCGCGGGCCGGGGCGCGCCGGCTTGGCGGCCTTGGAAGCCGGCGCGTGCGCCGACGATGGCGCGTGGGTTGGGGAAGACTTGTGGAGCTGCTTCATG
GCGGGAGAGCGCGGCCAGGCGGAGGCGGGTGCGTGGTTGGTGACCTGGTATGGTGGTGGGTTAG