Detailed information on CNT30456955


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523073Saccharum spontaneumSetaria italica44.9117.8589.06128reverse complement
CNT30249419Saccharum spontaneumAvena sativa35.0910.1790100forward

Expression of CNT30456955

Peptides detected in this lncRNA

>peptide 1 (85 aa)
AHYQEVDYCSEEVKSVAGFGRHHGGHGGVQQHVVKEKFEEVDSVSRAGGRHGHFEARESKFEEDVNTCTGEFHERKENFVVKADK*

>peptide 2 (71 aa)
MAATAASSSTSSRRSSRRSTACLAPAAATATSRPASLSSRRTSTPAPASSTSARRTSSSRPTSEISILSIFS

>peptide 3 (58 aa)
SLPGGGLLLGGGEVGGRLWSPSWRPRRRPAARRQGEVRGGRQRVSRRRPPRPLRGPRV*

Sequence

>CNT30456955
GCTCACTACCAGGAGGTGGACTACTGCTCGGAGGAGGTGAAGTCGGTGGCCGGCTTTGGTCGCCATCATGGCGGCCACGGCGGCGTCCAGCAGCACGTCG
TCAAGGAGAAGTTCGAGGAGGTCGACAGCGTGTCTCGCGCCGGCGGCCGCCACGGCCACTTCGAGGCCCGCGAGTCTAAGTTCGAGGAGGACGTCAACAC
CTGCACCGGCGAGTTCCACGAGCGCAAGGAGAACTTCGTCGTCAAGGCCGACAAGTGAAATATCAATACTGTCAATTTTTAGTTT