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Detailed information on CNT30456759


BLAST search results

BLAST vs Swiss-Prot:
sp|A2WXD9|PSBS1_ORYSI, E-value = 1e-44

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690660Saccharum spontaneumOryza sativa28.8517.0591.11135forward
CNT30674846Saccharum spontaneumSetaria viridis26.9224.6192.86126forward
CNT30522866Saccharum spontaneumSetaria italica36.9742.6197.69173forward
CNT30526392Saccharum spontaneumPhaseolus vulgaris17.0925.2483.7580forward
CNT30222634Saccharum spontaneumHordeum vulgare2537.0393.16117forward
CNT306195Saccharum spontaneumZea mays36.1144.7197.04169forward
CNT30363915Saccharum spontaneumSorghum bicolor64.5338.3794.37302forward
CNT30596071Saccharum spontaneumOryza meridionalis24.1529.7491.15113forward
CNT30101341Saccharum spontaneumOryza rufipogon24.1525.5191.15113forward
CNT30576149Saccharum spontaneumOryza barthii24.1523.0691.15113forward
CNT30604008Saccharum spontaneumOryza punctata27.7838.0189.23130forward

Expression of CNT30456759

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MMNLPLPGLMAATKKKRTLKMTSGSISLMGTPVSMLSCANAPFPVMISPMMEKATPSCASRPTNSSFDLVNPNSGPA

Sequence

>CNT30456759
TACTGTAACCATTTCATATATTAGCTAACATAAGCTCTTGTTTCTACAAGACAACCCAACACGACACCCTACCTTTCGAGGTGATCTCATCACGCTTACT
AATACACAACAAAGCACGTACGCACACGCACCGAGACGCACTGATCGATCATCAATCACAGGTAACCCAAGCGCACACTACTCATCACTCATCGGGTTCG
AGGCCAGCATCAATCAGCCTACTCTTCGTCCTCGCCGATGATGAACCTGCCGTTGCCGGGGTTGATGGCGGCGACGAAGAAGAAGAGGACGTTGAAGATG
ACGAGCGGCTCGATCTCGTTGATGGGCACCCCCGTCTCGATGTTGAGCTGCGCCAACGCGCCCTTCCCCGTGATGATCTCGCCGATGATGGAGAAGGCCA
CGCCCAGCTGCGCCAGCCGCCCCACGAACAGCTCGTTCGACTTGGTGAACCCAAACAGCGGCCCTGCA