Detailed information on CNT30456600


BLAST search results

BLAST vs Swiss-Prot:
sp|Q05758|ILV5_ARATH, E-value = 1e-07

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690805Saccharum spontaneumOryza sativa25.9826.1689.0473forward
CNT30523098Saccharum spontaneumSetaria italica31.6732.7295.5189forward
CNT30285276Saccharum spontaneumTriticum aestivum25.6226.4790.2872forward
CNT30105441Saccharum spontaneumOryza longistaminata24.9110.8785.7170reverse complement
CNT30100020Saccharum spontaneumOryza rufipogon34.8843.9587.7698forward

Expression of CNT30456600

Peptides detected in this lncRNA

>peptide 1 (67 aa)
LLMAGQGHLFLLEDGGLEVERRHGGADDRRRRDLRSHGAAAAVRGGGEVAAVPAEGAGFRVLRAMAR*

>peptide 2 (83 aa)
SSWPARDTFSFLKTEVSKSSDGMAVPMTDGDETFAATARRPRSAEAARWRLCLRRGRGLGFCGRWRGRWWRRWPPPFQRSRGG*

Sequence

>CNT30456600
CCTCCTCATGGCCGGCCAGGGACACCTTTTCCTTCTTGAAGACGGAGGTCTCGAAGTCGAGCGACGGCATGGCGGTGCCGATGACCGACGGCGACGAGAC
CTTCGCAGCCACGGCGCGGCGGCCGCGGTCCGCGGAGGCGGCGAGGTGGCGGCTGTGCCTGCGGAGGGGGCGGGGTTTAGGGTTTTGCGGGCGATGGCGA
GGTAGGTGGTGGAGGAGGTGGCCGCCGCCATTTCAGAGGAGCAGAGGGGGCTAGTGGAGCGTGAGGGAGGGTGGCTGGCTG