« Back to Saccharum spontaneum search


Detailed information on CNT30456340


BLAST search results

BLAST vs Swiss-Prot:
sp|Q00827|CB48_MAIZE, E-value = 4e-60

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522718Saccharum spontaneumSetaria italica40.1535.9692.08265forward
CNT30393130Saccharum spontaneumTriticum turgidum67.5854.2689.24446forward
CNT30664570Saccharum spontaneumTriticum dicoccoides68.9460.1191.65455forward

Expression of CNT30456340

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MACTKKPNMENMARRPFLISFTFSSANASGAPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

>peptide 2 (43 aa)
MVMRPSPKTSLVLVAGLPTNAREVRAMVAAAMSIRSQLLLSDA*

>peptide 3 (46 aa)
LTQAPFTNTCTPCSRYEYVCLRYTHASMPSLTCRGRSWWRRPRRCC*

Sequence

>CNT30456340
CTCTGACCCAAGCTCCCTTCACAAATACTTGTACACCCTGCAGTAGATACGAATACGTATGTCTACGGTACACGCACGCAAGCATGCCCTCACTCACTTG
CCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGACCCTTGCCGGTGACGATGG
CCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAACGCCTCCGGCGCGCCGAGCATGGC
CCAGCGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTCTCGGGGTCCGCGGACAGCCCAGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCG
CCGGTCAGGTAGCTTGGGGGCTCGCCGGAGAACGGACCCAGGTACAGGACGCGGTCGGCCCCGTACCAGGGGCTGCCGGACGCCGCTGGCTTGGGCTTGG
CAGCAGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCTGGTGCTGGTCGCCGGCTTGCCGACGAACGCGCGGGAGGTGAGAGCCATGGTGGC
GGCGGCCATGTCGATCAGATCACAGCTTCTTCTGTCTGATGCTTAGCTCTGTGTTGTGTA