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Detailed information on CNT30456255


BLAST search results

BLAST vs Swiss-Prot:
sp|P04782|CB24_PETSP, E-value = 5e-80

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30587669Saccharum spontaneumMusa acuminata55.8760.6186.65457forward
CNT30665949Saccharum spontaneumTriticum dicoccoides60.7658.4789.94497forward
CNT30129613Saccharum spontaneumCorymbia citriodora53.6759.9788.38439forward
CNT30149001Saccharum spontaneumBrachypodium distachyon23.9647.4693.88196forward

Expression of CNT30456255

Peptides detected in this lncRNA

>peptide 1 (81 aa)
SEQSCTVCINTDIQFTAYFINQVQTMHTNTLLVQSLTQAPFTNTCTPCSTYEYVCLRYTHASMPSLTCRGRSWWRRPRRCC*

>peptide 2 (43 aa)
MVMRPSPKTSLVLVAGLPTNAREVRAMVAAAMSIRSQLLLSDA*

>peptide 3 (79 aa)
MACTKKPNMENMARRPFLISFTFSSANASGSSASPSGSKSSGNTHPSAPSMAQRQWITSSSRFLAKVSGSADSPAVSQP*

Sequence

>CNT30456255
TCAGAACAATCATGTACAGTATGCATAAATACAGACATACAATTTACAGCATATTTTATTAATCAGGTCCAGACCATGCATACAAATACACTACTGGTAC
AATCTCTGACCCAAGCTCCCTTCACAAATACTTGTACACCCTGCAGTACATACGAATACGTATGTCTACGGTACACGCACGCAAGCATGCCCTCACTCAC
TTGCCGGGGACGAAGTTGGTGGCGTAGGCCCAGGCGTTGTTGTTGACAGGGTCGGCGAGGTGGTCGGCGAGGTTCTCGAGGGGACCCTTGCCGGTGACGA
TGGCCTGCACGAAGAAGCCGAACATGGAGAACATGGCGAGGCGGCCGTTCTTGATCTCCTTCACCTTCAGCTCGGCGAACGCCTCCGGGTCGTCGGCGAG
CCCGAGTGGGTCGAAGAGCTCCGGGAACACGCACCCGAGCGCGCCGAGCATGGCCCAGCGGCAGTGGATCACCTCCAGCTCGCGGTTCTTGGCGAAGGTC
TCGGGGTCCGCGGACAGCCCAGCGGTGTCCCAGCCGTAGTCGCCGGGGAACTCGCCGGTCAGGTAGCTTGGGGGCTCGCCGGAGAACGGACCCAGGTACA
GGACGCGGTCGGCCCCGTACCAGGGGCTGCCGGACGCCGCTGGCTTGGGCTTGGCAGCAGTCTTGCGCATGGTGATGCGGCCCTCGCCGAAGACGTCCCT
GGTGCTGGTCGCCGGCTTGCCGACGAACGCGCGGGAGGTGAGAGCCATGGTGGCGGCGGCCATGTCGATCAGATCACAGCTTCTTCTGTCTGATGCTTAG
CTCTGTGTTGTGTATGCG