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Detailed information on CNT30455895


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LQZ2|DRE2D_ARATH, E-value = 2e-09

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552163Saccharum spontaneumOryza glaberrima18.4220.1287.12163forward

Expression of CNT30455895

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MPRPRSQPGNSGKTSLMSSRSCSSSRQKAASETSSASSPARKSIGSMSGSCRPRRRSW*

>peptide 2 (42 aa)
MCCSRRRNHLGTSRLNCPGKKPKLIPLPSTGPIYQTNNPNTY*

Sequence

>CNT30455895
CAAATGACACAGGAAACAGAACACAGCCACTATAACTTACTACCAAAATTACCTCTCTCCGGCCGCTAATGTGCTGTTCGAGAAGAAGAAATCACTTGGG
CACGAGCAGATTGAATTGCCCGGGGAAAAAACCCAAGCTAATCCCCCTTCCAAGCACAGGCCCCATTTATCAAACCAACAACCCTAACACATATTAAGCT
CACTCCTTAATTCACACGCAGAAATCGACGGTTTGCAGGAAGTCATCCATGCCGCGGCCGAGGTCGCAGCCAGGTAACTCCGGGAAGACGTCGTTGATGT
CGTCGAGGTCCTGTTCGTCGTCCAGGCAGAAGGCCGCGTCGGAGACGTCCAGCGCGTCCAGCCCGGCGCGGAAGTCCATCGGGTCGATGTCGGGCAGCTG
CAGGCCGCGCAGAAGGTCCTGGTAGAACTCTGGGTCGTCCGGCACCTGCGCGGATTCAGTGGACGGCAGCGGCAGGACGACGGGTGGTGTTGGTGTCGCG
ACCAGCTCTGGAGACTGCGGGTTCGGCGCTGCTGCCTTGGTGGATTCGATCACGGACGACGGCGACGGGTGCGCGAATGAAGCAGTCGAGGTGGACGACG
AAGAGGACGCCGTCGGGGTGGCGCTTGCCGAAGTAGCTGGTGAGGAAGCCGGCACAGGCTGCCCGCGGCGGCGGCGCTTCTCGTCCGCGAAGCTCCGGGA
GGCGGAGAGGTAGGCCGCGGAGGCCGCACCGGCGGTGTCGAAGGTGCCAAGCCACTGCCTCTTGCCGGTGAACGGGTTGCGGATCTCCGCCGCCCACTTG
CCCCACTTGCGGAGCCTCACGCCGCGGTAGCTCTCCGGCGCGCCGCCGCTGGTGCACGCGGCGACAGTGGCCGCCGGAAGGACCG