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Detailed information on CNT30455848


BLAST search results

BLAST vs Swiss-Prot:
sp|Q8L9K1|ERF99_ARATH, E-value = 2e-22

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30254792Saccharum spontaneumAvena sativa11.0136.9183.64165forward
CNT30101508Saccharum spontaneumOryza rufipogon10.0157.4784.67150forward

Expression of CNT30455848

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MPVRRRCGAGQGERRAHAGTRARAWIRRGTGTAGRRRGRGDVADHAAAALQGERHVRVHVLRTPADLLVWPGLGMRRPHETVASC*

>peptide 2 (51 aa)
RGITSDVSFSTHQIIRDSVSEHSGVRIQEPHHACLVGIASYWNPVRFLKSG*

>peptide 3 (88 aa)
MSRESSSLRGRYWPCPCAAAAALARESDVPMPAPAPARGYDEALAPLAGGAGVATSRTTLLLRSKERDMYVFMSYAHRQTCSCGQGWA*

>peptide 4 (47 aa)
MRNAARSYAVAASSAVAKVPSQSRAPCRAGSRISAAYLPHGRRLTPR*

>peptide 5 (38 aa)
MAIFIPSNPTRHSSRHVLTYNEKSDRYHSTLESGQRTD*

>peptide 6 (51 aa)
MLKDLKIQKETLELYGYLYPLKSNPSQFKACPYIQREERSLPFHSGVWSTD*

Sequence

>CNT30455848
CGAGGCATCACGTCAGATGTTTCTTTCTCGACGCACCAAATTATCCGTGATTCCGTGAGCGAACATTCAGGGGTCAGGATTCAGGAGCCCCATCATGCGT
GTTTAGTTGGCATTGCATCCTATTGGAATCCGGTTCGGTTCTTAAAATCCGGGTAAGAATGCAACCACGTCGTGTTTGGTTTGGTTGGCTGATTCTGTAC
TCAACATTTGTTCACACCGAGAAATCTTCATTAAACTAAGCATTCATGTTTTCATCTTGGCCTTTCTATATATTCACGATTATTAACAATAAATATATCC
AAAAATAAGATCGTGCACGTTCGCCCCCCAAACCAAAATGTTGAAGGATCTCAAAATACAAAAAGAAACATTGGAGTTGTATGGCTATCTTTATCCCCTC
AAATCCAACCCGTCACAGTTCAAGGCATGTCCTTACATACAACGAGAAGAGCGATCGCTACCATTCCACTCTGGAGTCTGGTCAACGGACTGACTAATAA
TGCTTAGAAACATTCACTATTCACAGGGGGCCATCATCAGCTGCCAATGACCCGTTTCCTTTGAGATCGCATTCGCCGTTCACTTGGCTTCCGTCACCCC
AGCAGCCTGCTCCGACGTGGCGGTTGCGACGCCGGCGTTCCCGCAGCCCGCGACCGCCGGCGGGAAGTTGAGCAGCGCCTTGGCGCCCCGCATGCGGAAC
GCGGCGCGGTCGTACGCCGTGGCGGCCTCCTCGGCCGTGGCGAAGGTGCCGAGCCAGAGCCGCGCCCCGTGCCGCGCCGGGTCACGGATCTCCGCGGCGT
ACTTGCCCCACGGCCGCCGCCTCACCCCGCGGTAGTGCCGCCCCGTGGTGGCCGCCTTCGGTGCGTGCGCGGCCCTGCTGCTGTTGGTGCCACCGACGCC
GCCGCCCTTGCGCGCGGCGGCGCCGGAAGCGAGCGCCTTCTTCAACGTAGGCAACGACGAGGGCGGCGGCTGGTCGGTGGCGGGCGCCGCAGCGGAGCCG
GATGCCTCGCGGAGCACGTCGAAGAGGACCATGTCCAGGGAGTCGTCCTCGTTGAGGGGGAGGTACTGGCCATGCCCGTGCGCCGCCGCTGCGGCGCTGG
CCAGGGAGAGCGACGTGCCCATGCCGGCACCCGCGCCCGCGCGTGGATACGACGAGGCACTGGCACCGCTGGCCGGAGGCGCGGGCGTGGCGACGTCGCG
GACCACGCTGCTGCTGCGCTCCAAGGAGAGAGACATGTACGTGTTCATGTCTTACGCACACCGGCAGACCTGCTCGTGTGGCCAGGGCTGGGCATGAGAC
GACCGCACGAGACTGTGGCCTCTTGTTGACCTGTGGGGGAGAGAGAGTGCCTCGGGGAGGAGGAAAGTTGTGCAGTGGCTGCGCTATTTGAGTTGGTGCA
AACTGGCGGAATTCCCAGACGAGGGCTGCTGATGACATGTGATTGAGTATATAAAGCACGCAGAATGTGAATTGGCAACCATCTCTCGTGCGCTTACG