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Detailed information on CNT30455806


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ZBP3|H2B2_ORYSJ, E-value = 5e-55

BLAST vs NONCODE:
NONORUT000045, E-value = 5e-26

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671720Saccharum spontaneumSetaria viridis32.1761.4793.84276forward
CNT30304304Saccharum spontaneumTriticum aestivum36.8362.9596.2316forward
CNT30684130Saccharum spontaneumTriticum urartu53.6163.4591.74460forward
CNT30496069Saccharum spontaneumDigitaria exilis45.849.2594.4393forward

Expression of CNT30455806

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MTNSIPKASPVHINSCRIPTTHRSSIDFKFQLATNTATTITTRQTEPQLPAPPSSYYHQPKMR*

>peptide 2 (29 aa)
MSLMKEFMMDMALEEMPMSGWTCFSTLKM*

Sequence

>CNT30455806
TGGCATAGTTGTGCATATATAATTATCATATCAGTTAAATGACAGGCATATGACAGGTACTGTACACGGTAAGAGCATCAAACCGTGACACAAATCGAAT
GTAGAACAAGCACCACGATTATTTCCAGATCCATGACAAACAGTATTCCAAAAGCATCACCAGTTCACATCAATTCTTGCCGCATCCCAACTACACACAG
ATCATCAATCGATTTCAAGTTCCAACTTGCCACTAATACTGCTACCACTATCACTACCAGACAGACTGAGCCACAACTACCAGCACCACCCAGTAGCTAC
TACCACCAACCTAAGATGAGGTGAACTTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGAGGACGAGGCGGACGGAGGT
CTGGATCTCGCGGGAGGTGATGGTGGGCTTCTTGTTGTAGCGGGCGAGCTTGGCGGCCTCGCCGGCGAGCTTCTCGAAGATGTCGTTGATGAAGGAGTTC
ATGATGGACATGGCCTTGGAGGAGATGCCGATGTCGGGGTGGACCTGCTTCAGCACCTTGAAGATGTAGATCTTGTAGGTCTCCACAGACTTCTTGGCCT
TCTTCTTGCCCTTCTTGTCGCCGCCCTCCTTGCCGGCCGACTTGCCCGCCGGGAGGCGCTTCTCCGCCTTGGGCTTCTTCCCCGCCGGGGCCTTCTCGGC
CGCGGGCTCCTCCTCCGCGGGCTTCTTCGCCGCCGGCTTCTTCTCCGCCTTAGGCGCCATCGATGCGGCTTGCTGTTGCGTGAGGCTTCAGGGAACGGGG
GGATTCGCTCGCTCGGTCGGTTTGAGGACGGCGAATTTCGATTGCTGTGAGGAGAGGC