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Detailed information on CNT30455685


BLAST search results

BLAST vs Swiss-Prot:
sp|O04133|SRC2_SOYBN, E-value = 2e-26

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30522749Saccharum spontaneumSetaria italica44.9246.7887.16654forward
CNT30293057Saccharum spontaneumTriticum aestivum14.5625.2188.21212forward
CNT30437732Saccharum spontaneumAegilops tauschii14.0129.6989.71204forward
CNT30247924Saccharum spontaneumAvena sativa27.225.6586.36396forward
CNT30135479Saccharum spontaneumLolium perenne27.5428.7988.53401forward
CNT3014485Saccharum spontaneumZea mays6.847.694.9599forward
CNT30680887Saccharum spontaneumTriticum urartu6.3232.1784.7892forward
CNT30339116Saccharum spontaneumEragrostis tef12.2925.1189.94179forward
CNT30363948Saccharum spontaneumSorghum bicolor20.2696.4197.97295forward
CNT3099938Saccharum spontaneumOryza rufipogon19.2326.4290.71280forward
CNT30580297Saccharum spontaneumEchinochloa crusgalli28.0229.9394.12408forward

Expression of CNT30455685

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MAGGELAVVGGFFLSDPAETRESQDGFGLVGSPRSIGLCAAACAGST

>peptide 2 (37 aa)
LNRRKPRAIHVMSRFQHRRSIYNTIYIYQIFKMHNLI*

>peptide 3 (35 aa)
MSPISRPPTAPPSSPAPSPIPKLFFFFCGFTACCW*

>peptide 4 (91 aa)
MRAGKRSPPRRPCRRWAGSRTRAGKRSPPRRPCRRWAGTRRREVGTRRPWLPAGMRQEAGTRRPCLKEAGRRRPGCMRTGRGRSRWRRPPG*

>peptide 5 (63 aa)
MWTSPTSRSPRARSARRRTWREPAPVAGTAKRSVAFQVGLRPPMRSAWTRCRDRGSPESDTTA*

Sequence

>CNT30455685
TTTGAACAGAAGAAAACCGCGTGCAATTCATGTAATGTCACGCTTTCAGCATCGTAGGAGTATTTACAATACCATATATATATATCAGATATTTAAGATG
CATAATTTGATTTAGTCCTGACAATTAGGTTGCGTACAAAACGAAACAAACAAATCACAAAGGCAAATCCAAAACGAAACACCTCTGTCTCCGATGGGGA
TCACGTCACCACTCATCAGAGCACTCTAGAAATCGAAGCCACCATCGAAGCCACCGCCGTCGTCGAACCCGGCGTCGTAGCCGGCATCATACGCTGACGC
GTCCGAGATCATGTCGCCGATCAGCAGGCCCCCGACGGCGCCTCCGAGCAGCCCGGCGCCGAGCCCCATCCCGAAGTTGTTCTTCTTCTTCTGCGGCTTC
ACGGCCTGCTGCTGGTAGCCGTACCCGGCGGCCTGCGGCGGCGGGTAGCCGTACCCGGCCTGCGGCGGCGGGGGCGGGTAGCCATACCCTGCGGCCTGCT
GCGGCGGGTACCCGTACCCGCCGTACTGCGGCGGAGGAGCGGCGTAGGGCGCCGCCGTGCTGGGACCGGCGGCAGGGTAGGCCGTCACCGGTTCCCCCGC
CTTCGCCGGCTTGCCTGCCGCGGGCGGGTAGCCGGATGAGGGCGGGTAAGCGGTCGCCGCCGCGTCGGCCTTGCCGCCGGTGGGCGGGTAGCCGGACGAG
GGCGGGTAAGCGGTCGCCGCCGCGTCGGCCTTGCCGCCGGTGGGCGGGTACGCGCCGCCGGGAGGTGGGTACGCGTCGGCCTTGGCTGCCGGCGGGTATG
CGGCAGGAGGCGGGTACGCGTCGGCCTTGCCTGAAGGAGGCGGGTAGGCGGCGGCCTGGGTGTATGCGGACTGGGCGGGGGCGTAGCCGTTGGCGGCGCC
CGCCTGGGTGACCTCGCCGAGCTTGTACGACAGGTTGAGGACTCCCTGTGGCTTGCCCGAGGAGATCTTGCGGACCTGGTAGGCGACGAACTTGGCGGGG
ACGGGGCCGTCGGGGGCGCCGGAGAGGAGCTCGGAGAGCGGGATGTGGACCTCGCCGACGTCGCGGTCGCCGAGGGCGCGCTCGGCGCGGAGGAGGACGT
GGAGGGAACCCGCGCCGGTCGCCGGGACGGCGAAGCGGAGCGTGGCGTTCCAGGTCGGGTTGCGGCCGCCGATGCGGTCGGCCTGGACCCGCTGCCGCGA
CCGGGGGTCGCCGGAGAGCGACACAACGGCGTAGACCTCCATCTTGGACATCAGGTTCACGTCCTTGAGGTCCTTGGCCGAGATCAGCGTCAGCTCCAGC
GTCCGCGTCGCCGCCATGGCCGGGGGTGAGCTCGCGGTCGTGGGTGGATTTTTCTTGTCTGATCCGGCGGAGACGAGAGAAAGTCAAGATGGATTTGGTT
TGGTTGGTTCTCCGAGATCGATCGGTTTGTGTGCTGCTGCTTGTGCTGGATCGACG