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Detailed information on CNT30455311


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690727Saccharum spontaneumOryza sativa29.9147.5984.78335reverse complement
CNT3011305Saccharum spontaneumZea mays8.2127.2296.7492forward
CNT30353440Saccharum spontaneumEragrostis tef26.6122.7783.22298forward
CNT30595519Saccharum spontaneumOryza meridionalis6.5235.7893.1573reverse complement
CNT30369233Saccharum spontaneumOryza glumipatula7.5927.8790.5985reverse complement
CNT30574824Saccharum spontaneumOryza barthii7.5940.6790.5985reverse complement
CNT30497582Saccharum spontaneumDigitaria exilis8.2144.0296.7492reverse complement
CNT30603436Saccharum spontaneumOryza punctata7.3232.4193.982reverse complement

Expression of CNT30455311

Peptides detected in this lncRNA

>peptide 1 (94 aa)
HDKGSDISDPNVVGQNDLLIVGPGVLGRIVAEKWQKVYPGCKVYGQTASKNHHSELTDLGIIPSLKGTTIHQKVSHVIFCAPPSGSDDYPGDVR*

>peptide 2 (63 aa)
MLLTKVGNLTRSLKALLVMTVHWGREWRIRKLGLRSVGNQSIQASPNSLVSAVNTSSHTVQLL*

>peptide 3 (54 aa)
MDAVNKSGKFDTKFEGFTGYDGPLGKRMENSKTRAEIGWEPEYPSFTEFLGISS*

>peptide 4 (50 aa)
MLFSALPRLVQMITLGMSGKQHQIGVVKDLSCLHQVQLCMTAVTTACAMR*

>peptide 5 (49 aa)
MRKGTLDTRPDHIINQIHYEVTASLAIAIMKKRLRSRIFLGCDNKPLSR*

Sequence

>CNT30455311
CTCATGATAAAGGGTCTGACATTTCTGACCCCAATGTTGTTGGCCAGAATGATTTACTGATTGTGGGCCCTGGTGTTCTTGGACGAATCGTAGCTGAGAA
GTGGCAAAAGGTATATCCAGGTTGCAAAGTTTATGGCCAGACTGCAAGCAAAAATCATCACAGTGAGTTAACAGATCTTGGCATCATCCCCTCATTGAAA
GGGACCACTATTCATCAGAAGGTTTCACATGTTATTTTCTGCGCTCCCCCGTCTGGTTCAGATGATTACCCTGGGGATGTCAGGTAAGCAGCATCAAATT
GGAGTGGTGAAGGATCTTTCCTGTTTACATCAAGTACAGCTCTGTATGACTGCAGTGACAACAGCTTGTGCAATGAGGTAGGTCCGTCAGTGGCAATTGG
CAGGAGCCCTCGTACTGATGTGCTTCTAAAAGTGGAAAATGTTGTTCTTGAGGCAGGAGGCTGTGTTCACAGAGGTGCTCATGTTTTCTGGATGAGGAAA
GGAACTTTAGACACACGACCTGATCATATCATCAACCAGATTCATTATGAGGTAACTGCTTCCCTTGCAATAGCAATCATGAAAAAGAGACTGCGGAGTC
GAATATTTTTGGGCTGTGACAACAAGCCCCTTTCCAGGTAAGAAATAATGGATGCTGTTAACAAAAGTGGGAAATTTGACACGAAGTTTGAAGGCTTTAC
TGGTTATGACGGTCCATTGGGGAAGAGAATGGAGAATTCGAAAACTCGGGCTGAGATCGGTTGGGAACCAGAGTATCCAAGCTTCACCGAATTCCTTGGT
ATCAGCAGTTAACACATCCTCGCATACTGTTCAGTTACTCTGACTCAGCTGAGTAGCAACTGCGGTTAGATTGTACCATCCTCTGAACTGGTGAGGGTGT
ACATCTCAGTCTACTCCGGGCCTGTCCTCGGTATTTTGATTCTCATACTATTTGCCCCACCCCTCCGGGCAATATATACAGTCACGTGAGTCGATTTGTC
GATCATGAACATACATGGCCAACAAGTTTTAACTTTTAGTCGCGGTTGTATAACTGCAAACTAGTTTTAACTTTTAAGGTCTGGTCCTCTGGCCAACAAG
TTGATTTGTCGACTGCAAGT