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Detailed information on CNT30455220


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690471Saccharum spontaneumOryza sativa17.3550.5786.36132forward
CNT30674416Saccharum spontaneumSetaria viridis11.325.3794.1986forward
CNT30552300Saccharum spontaneumOryza glaberrima17.3520.0986.36132forward
CNT30363793Saccharum spontaneumSorghum bicolor40.0864.2190.82305forward
CNT30595494Saccharum spontaneumOryza meridionalis17.2120.0387.02131forward
CNT30369290Saccharum spontaneumOryza glumipatula17.3528.7686.36132forward
CNT3099710Saccharum spontaneumOryza rufipogon17.3520.7286.36132forward
CNT30574579Saccharum spontaneumOryza barthii35.3556.6382.16269forward
CNT30497518Saccharum spontaneumDigitaria exilis38.547.2683.28293forward
CNT30115620Saccharum spontaneumOryza nivara17.3524.4487.88132forward
CNT30557683Saccharum spontaneumPanicum hallii38.2480.6182.82291forward

Expression of CNT30455220

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MTLHNLIRAYIHKARTHDGRRAWYGRAAGGSVSPGDEALLALVELAGAGVEVLLDPGLAHHDAVAVVTVVVAAGA*

Sequence

>CNT30455220
CAAACTACCTTAAGTTTAAATAAGTTTATAGAAGGTATTATCAATTAATATGTATGACTCTGAATAGGTATATTATAAAAATTATATTTCTGATGAATCT
AACGAGACTTATTTAGTCTGATAAATATCAGCATATTTTTTTATATAAATTTGGTAAAACTTTAACTTAGTACATTTTAAAACTGTATTCTTTTTTTCTG
ACAGAGAGAATGTGCATGGTAATGTAGGTAGTACGGAGTTTATTCAGGTCACGAGCTTATTGTCGTAATTCGTACAGAAGCTGAGTGCGTACACGCCAGC
CAAGAGCGATGACCCTGCACAATCTCATACGCGCATACATACATAAGGCACGCACGCACGACGGACGGCGTGCATGGTACGGTCGTGCGGCCGGCGGCTC
AGTTAGCCCTGGCGACGAAGCTCTCCTTGCGCTCGTGGAACTCGCCGGTGCAGGTGTTGAAGTCCTCCTCGACCCTGGTCTCGCGCACCACGATGCCGTG
GCCGTGGTGACCGTGGTGGTGGCCGCCGGTGCGTGACACCGTGTCGACCTCCTCGAACTTCTCCTTGACGACGTGCTGCTGGACGCCGCCGCCGTAGCGG
CCGAAGCCACCGGCCGGGGCCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCTCCTGGTAGTAAGCCATTGGTGATGCTTGGTGTTTGTTGTAGCGCC
TGTGCGTCGTTCAAGTGCTCGTGTGGATTGTTGGTGTGATGGATGCATGGTAGCGTTCGTC