Detailed information on CNT30454582


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690174Saccharum spontaneumOryza sativa8.726.8688.18220reverse complement
CNT30550503Saccharum spontaneumOryza brachyantha4.3123.4983.49109reverse complement

Expression of CNT30454582

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MNIPLHKRSDDRFEVECWLLILQFFGYLFVFFC*

>peptide 2 (34 aa)
MQYSLTSITNQIEVLMFTGCQKEPWMRVLIIYSI*

>peptide 3 (29 aa)
MTDLKWNVGCSYCSFLAIFLFSSVRSCKAL

>peptide 4 (76 aa)
MCRVAASNWNGEGSFLFTSSTAVYDCSDNGFCSEDSPCVPIGQSPRTDVLLKAENVVLEAGGCVLRLVGLYISSRT*

>peptide 5 (46 aa)
MVRWGRGWRTPKLGQSSDGSPSIRALQSSLVSAISNFHAMSLNTCD*

>peptide 6 (92 aa)
MKCQCCMNEMICQPPRATGSISAMDLWLLSDTTRPHSHVALSNRPFLCCLWSAASPPTHRCRGLTTPPHQLPLLVADLLLWHPSKPSQHTRP*

>peptide 7 (78 aa)
MKKRLRSRIFVGCDNEPLSRLEIMDRVNRSGKFDTQFQGFTGTDGPLGKRMENSKTRAELGWQPKYPSFTEFLGLSNL*

>peptide 8 (41 aa)
MEKALSYSPRVLLCMTAVTMDSAVRILLVYQLVRALVLTYF*

>peptide 9 (34 aa)
MVQVSLQSNIPRSVLHLKPTSVRSQGHVRHPYTR*

Sequence

>CNT30454582
CGGTCGGATATATTAAACTAAAGGGTAGGAGATACTTGCTGAAGTTAATTTTGTTTTCATGCAGTTAACTACAAGTCACTCCCTATAAAAAATAAAAATC
AATCATTAGTTTTCCATCTCTGCTAACATTTCTTTAGTGGTACAGCAAAGTACCATCAGCACTGCGATTCTGGCAATCTTAACCTAATGATCTTTTAGTG
GAGTGTCGTGTCCTTGTGATATCTTCTTTACATTATCATTATAGTACCGATTGTAAACGTAAATTTCTTAACGGGTCAAATACTGTAAAGCTTGGTCTAA
TTAAGAGCTTGCCTTATAGGAATATCCAGGTTGCAAAGTTTATGGCCAGACTGCAACCACAGATCATCACAGTGAATTGACTGACATTGGTATCATTCCC
TCCTTGAAGGGGTCCGTACCGGGTCCAAAATTTCCATATGTTATTTTCTGTGCTCCACCATATCGTTCTGAGGATTATGCTGGAGATCTGAGATTTTTTT
TTTGAAATCTCCATAGTCCATACTTGAAAGTTGTAAGAGAATCTCCAATAGTCCCCCCCAACCCCCACCCAAAAAAATGGTAAATCAATGAGTTTTCCAT
GTTGATAAAAAGTTAGGAGCACATTTGTTGGGTTCCTCCAACCATTTCCAAAATATCGCTCCTAAAGTATACAAGGCAATTTTGCATAGGAATCTCGCAT
TATTTTCAAATCACCCCAACCAATTTTATACTTAATTTCTCTCGTGCATTTGCATTGGTAACTTTGTCCTTACTCCTTATTCTTCCCCACATCTTTCCAC
CTCCAGATTGGCCGATTGATATGTGCACGTATATTTCTACGCTATTGGATCGATTTTCCATGTGCGGAAAGATTGGGAGTTGAGATACAGAGTTGTGGGA
GAGCGATTTTTTTTTTTCAATCTTGCCAAAAAAAATCAAGATTGGGAGTAGGTTTGAAAACTTTTTGGAGATGCTCTAATGCATGATTGGCTTCTGAGTA
ACATGCGTCTAGAAAATAGTTCAGAAATGTTATATACCTTGGATTTCTAGGGTTTTGGGCATTTATTCTCTTATTGAATTTACTAGTTTAGTATGAGTTA
GTAATCTTTTATAATTCGACAAGACTTTGAGATGAGTTGGATAAGAAAAACACATAGAACTTTGCAAGGCTTTGGATGAAATGTCAATGCTGCATGAATG
AGATGATATGCCAGCCCCCTCGCGCCACGGGCAGTATCTCTGCCATGGATCTATGGCTGCTTTCTGACACCACACGACCCCATAGCCACGTGGCTCTTTC
CAATCGGCCATTCCTCTGCTGCCTGTGGTCAGCGGCATCCCCACCAACTCATCGATGCCGCGGACTCACCACCCCTCCTCACCAACTGCCACTGCTGGTT
GCCGACCTCCTGCTATGGCATCCCTCTAAACCCAGTCAGCACACCAGACCCTGATGATCCCCTCTCTCCTGAACTCAACATCATGGTGGAAACTTACAGG
ATGCCAATGACTGGAAGGAGCGTCGTTTTCAGGAAATTGATGTATAAGAAGTGTGGAAAACATTGATGAATGGTTCAAGTGTCCTTGCAGTCAAATATAC
CTCGCTCTGTCTTACACTTGAAACCTACTAGTGTCAGGTCCCAAGGACATGTAAGACATCCTTATACCAGATGACATGTGCAGAGTAGCAGCTTCGAATT
GGAATGGAGAAGGCTCTTTCCTATTCACCTCGAGTACTGCTGTGTATGACTGCAGTGACAATGGATTCTGCAGTGAGGATTCTCCTTGTGTACCAATTGG
TCAGAGCCCTCGTACTGACGTACTTCTAAAAGCTGAAAATGTTGTCCTTGAGGCAGGGGGCTGTGTTCTTAGGCTAGTAGGACTTTACATATCCTCACGG
ACATGAATTTTTTGGGTTCCAACCTTCAAGCACCTTACTTAGATATATATATAAATACATTGACTGATTCCTACTGAATTAAATTGGGCAGAACTGATGC
AATATTCCTTGACTTCCATTACAAATCAGATCGAGGTCCTCATGTTTACTGGTTGTCAAAAGGAACCTTGGATGCGCGTCCTGATCATATACTCAATCTG
ATACATTATGAAGATGCAGCCTCTCTTGCGATTGCCATCATGAAAAAGAGATTACGGAGCCGCATCTTTGTGGGCTGTGACAATGAGCCTCTGTCCAGGC
TAGAGATTATGGACCGTGTCAACAGAAGCGGGAAATTTGACACACAATTTCAGGGCTTCACTGGGACTGATGGTCCGCTGGGGAAGAGGATGGAGAACTC
CAAAACTCGGGCAGAGCTCGGATGGCAGCCCAAGTATCCGAGCTTTACAGAGTTCCTTGGTCTCAGCAATCTCTAACTTTCATGCGATGTCGCTAAATAC
TTGTGATTAAAGATGAATATACCGTTACATAAAAGAAGTGATGACAGATTTGAAGTGGAATGTTGGTTGCTCATACTGCAGTTTTTTGGCTATCTTTTTG
TTTTCTTCTGTTAGATCATGTAAAGCATTG