Detailed information on CNT30454576


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30185545Saccharum spontaneumSecale cereale14.3142.9386.3688reverse complement

Expression of CNT30454576

Peptides detected in this lncRNA

>peptide 1 (41 aa)
MEKALSYSPRVLLCMTAVTMDSAVRILLVYQLVRALVLTYF*

>peptide 2 (38 aa)
MVRWGRGWRTPKLGQSSDGSPSIRALQSSLGGRGRYICN

>peptide 3 (48 aa)
SAAADSSSPSSIGVSSDAAVSSLSPESIGHNDLLIVGPGVLGRILAEM*

>peptide 4 (82 aa)
MKKRLRSRIFVGCDNEPLSRLEIMDRVNRSGKFDTQFQGFTGTDGPLGKRMENSKTRAELGWQPKYPSFTEFLGWKGSLHLQ*

>peptide 5 (69 aa)
PPPPIPPPPPPSVYQVMQRLARSRPRASGTTICSSLGRACSAGSSPRCSSSFELEWRRLFPIHLEYCCV*

Sequence

>CNT30454576
GTCCGCCGCCGCCGATTCCTCCTCCCCCTCCTCCATCGGTGTATCAAGTGATGCAGCGGTTAGCTCGCTCTCGCCCGAGAGCATCGGGCACAACGATCTG
CTCATCGTTGGGCCGGGCGTGCTCGGCCGGATCCTCGCCGAGATGTAGTAGCAGCTTCGAATTGGAATGGAGAAGGCTCTTTCCTATTCACCTCGAGTAC
TGCTGTGTATGACTGCAGTGACAATGGATTCTGCAGTGAGGATTCTCCTTGTGTACCAATTGGTCAGAGCCCTCGTACTGACGTACTTCTAAAAGCTGAA
AATGTTGTCCTTGAGGCAGGGGGCTGTGTTCTTAGGCTAGATGCAGCCTCTCTTGCGATTGCCATCATGAAAAAGAGATTACGGAGCCGCATCTTTGTGG
GCTGTGACAATGAGCCTCTGTCCAGGCTAGAGATTATGGACCGTGTCAACAGAAGCGGGAAATTTGACACACAATTTCAGGGCTTCACTGGGACTGATGG
TCCGCTGGGGAAGAGGATGGAGAACTCCAAAACTCGGGCAGAGCTCGGATGGCAGCCCAAGTATCCGAGCTTTACAGAGTTCCTTGGGTGGAAGGGGTCG
TTACATTTGCAATAG