Detailed information on CNT30454508


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674368Saccharum spontaneumSetaria viridis26.1232.4993.23192forward
CNT30388932Saccharum spontaneumTriticum turgidum20.1417.1788.51148forward
CNT30238074Saccharum spontaneumBrassica oleracea14.4240.4682.08106forward
CNT30264426Saccharum spontaneumBrassica rapa14.9721.1182.73110forward
CNT30682025Saccharum spontaneumTriticum urartu25.3130.7986.56186forward
CNT30342210Saccharum spontaneumEragrostis tef65.3166.3987.92480forward
CNT30479293Saccharum spontaneumArabidopsis halleri7.0720.7288.4652forward
CNT30363528Saccharum spontaneumSorghum bicolor72.5253.7894.37533forward

Expression of CNT30454508

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MGGMRYAAMISDTRAAMRGILFRFFTRGMSSDSPIAMIFWLITTILSSFLLNSGFSTSRTAGKILAVVRLV

>peptide 2 (41 aa)
EICKFTWYSLQTLLNGFLVLHNQPNVLDTFIMLVRHSMVAK*

>peptide 3 (42 aa)
MLLLLMQFTVTYMEMPHNKNLPSFMLPKSQYFTDEHKKMQIL*

>peptide 4 (34 aa)
MVQPPNSVKWFSSVTQSTKCAGYIHHASSTFHGC*

Sequence

>CNT30454508
GAGATATGTAAATTCACATGGTACAGCCTCCAAACTCTGTTAAATGGTTTTCTAGTGTTACACAATCAACCAAATGTGCTGGATACATTCATCATGCTAG
TTCGACATTCCATGGTTGCTAAGTAACTGCGCTGAGGCCATATGTGATACAGTTGATCATATGAAGGTCTGTATGCTTTTGCTTCATTAGCAGTACAACA
ACTTCGGACGCTCCCTTCTGTTGGAAAACTGGAACGCTCGATTCTGATGCTATTGCTTCTGATGCAGTTCACTGTCACTTACATGGAGATGCCACACAAC
AAAAACTTGCCAAGCTTTATGTTGCCGAAGTCTCAGTATTTTACAGACGAACACAAGAAGATGCAGATCCTCTAACCATCCAGCCGTTTCACCACTCAAG
GCCCCTTAGGGAGAAAGCACCAACTTGTCTTTCGGGGTGAATAATTCTTAGACAAATCTTTCTACAGAATCAGTAAACAAGCTGGGGCTCAAATTCAGCA
AAATCAACTGAGCCAGACTCGATGGGGGGCATGAGGTATGCGGCAATGATCTCAGACACCAGAGCGGCAATGAGAGGAATCCTCTTCAGGTTCTTCACTA
GGGGAATGTCGTCAGATTCTCCGATAGCAATGATCTTCTGGTTGATCACTACCATCCTGTCAAGCTTCCTCTTGAATTCAGGGTTCTCGACATCCAGAAC
AGCAGGGAAGATCCTCGCTGTTGTGCGGTTGGTCT