Detailed information on CNT30454405


BLAST search results

BLAST vs Swiss-Prot:
sp|O82043|ILV5_PEA, E-value = 9e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT306200Saccharum spontaneumZea mays85.3790.0796.33245forward
CNT30363999Saccharum spontaneumSorghum bicolor84.6785.2695.88243forward

Expression of CNT30454405

Peptides detected in this lncRNA

>peptide 1 (71 aa)
LLMAGQGHLFLLEDGGLEVERRHGGADDRRRRDLRSHGAAAAVRGGGEVAWGLRGGEGDGGGGCACGGGGV*

>peptide 2 (79 aa)
SSWPARDTFSFLKTEVSKSSDGMAVPMTDGDETFAATARRPRSAEAARWHGGCVAGKETEVAAVPAEGAGFRVLRAMAR*

>peptide 3 (45 aa)
MGAAWRGRRRRWRLCLRRGRGLGFCGRWRGRWWRRWPPPFQRSRGG

Sequence

>CNT30454405
CTCCTCATGGCCGGCCAGGGACACCTTTTCCTTCTTGAAGACGGAGGTCTCGAAGTCGAGCGACGGCATGGCGGTGCCGATGACCGACGGCGACGAGACC
TTCGCAGCCACGGCGCGGCGGCCGCGGTCCGCGGAGGCGGCGAGGTGGCATGGGGGCTGCGTGGCGGGGAAGGAGACGGAGGTGGCGGCTGTGCCTGCGG
AGGGGGCGGGGTTTAGGGTTTTGCGGGCGATGGCGAGGTAGGTGGTGGAGGAGGTGGCCGCCGCCATTTCAGAGGAGCAGAGGGGGC