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Detailed information on CNT30454026


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84NJ4|H2A3_ORYSJ, E-value = 7e-15

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671931Saccharum spontaneumSetaria viridis6.8424.2396.8363forward
CNT30520471Saccharum spontaneumSetaria italica17.1635.5194.3158forward
CNT30165626Saccharum spontaneumPistacia vera16.6142.2783.01153forward
CNT30555775Saccharum spontaneumOryza glaberrima17.4825.3590.06161forward
CNT30436659Saccharum spontaneumAegilops tauschii17.5927.5594.44162forward
CNT30680268Saccharum spontaneumTriticum urartu17.4837.190.68161forward
CNT30720567Saccharum spontaneumTriticum spelta15.4225.492.25142forward
CNT30351418Saccharum spontaneumEragrostis tef19.2231.2290.4177forward

Expression of CNT30454026

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAFLAAPEPIALPLPAMATRGNPQREAKRSEGLGRREKAKARSERLWWEDGHK

>peptide 2 (65 aa)
MWRGTMRVFLLSRAAFPASSRTCTNRERNPNDYSKFSLVQQILAKRPPQFESLAKIPQLLYFKSW*

Sequence

>CNT30454026
ACGAAATGTAAATTGGAATACCAGGTTTGATCAACCAGTCATCCAAAGGATGCACCGTTTATAGCAACAAATACAGAACTAATCCTTAGCAAGCACAAGA
GTAACCTAGTTTAGCAGTGGCACACAGGAACACACATCCCCAACTACAACGCAACACCTAAGGCGAGTCTAGATCGTACTACACAGGCACATGTTGATAC
GGCAGCATCCAGAAGAGGTTGCCACCATCGGAAGAAAGGCGTGGTCAGGGATCTAGTCCTCATCGCCAGCGGGAGAGCTCCTCGTCGTTGCGGACGGCGA
GCTGGATGTGGCGCGGCACGATGCGGGTCTTCTTGTTGTCACGAGCCGCATTCCCGGCAAGCTCGAGAACCTGCACGAACAGGGAGAGAAACCCCAACGA
TTACTCAAAATTCTCACTGGTTCAACAGATACTAGCAAAAAGACCGCCCCAATTTGAATCACTAGCCAAAATTCCCCAATTATTGTACTTCAAATCCTGG
TAATTTCGGCAAATAACCCCCAATTTATTTTATTTTTTTTAAAAGAAACCCCGGTACCCAAAATTTTCCAGTCCTCGAAACCAAATCGAAGACTATAGCC
GCAAAATTGGAAGTCTTGTTTACCTCAGCAGCGAGATACTCGAGCACGGCAGCGAGGTAGACGGGGGCGCCGGCGCCGACCCTCTCGGCGTACTTGCCGG
CCTTGAGGAACCTGGCGATCCTTCCCACGGGGAACTGGAGCCCGGCCTTGGAGCTCCTGGACATGGCCTTCTTGGCGGCGCCCGAGCCGATCGCCTTACC
TCTCCCGGCCATGGCTACCAGAGGGAATCCGCAGCGAGAAGCGAAGCGAAGCGAAGGCTTGGGAAGACGGGAGAAAGCGAAAGCGCGGAGCGAGCGGTTG
TGGTGGGAGGACGGACACAAG