Detailed information on CNT304540


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30291456Zea maysTriticum aestivum6.2425.2188.5261forward
CNT30389102Zea maysTriticum turgidum6.3529.3888.7162forward
CNT30437581Zea maysAegilops tauschii6.242088.5261forward
CNT30661738Zea maysTriticum dicoccoides6.4521.890.4863forward
CNT30681988Zea maysTriticum urartu6.2427.9888.5261forward

Expression of CNT304540

Peptides detected in this lncRNA

>peptide 1 (85 aa)
MPYGHMTNILHRGSHRNKICTDDVTNRMHIDGKWRHSTKEKKKCAQSSGHGLVLCMHPAGPHDATLAGAEEEEEQDNYSFTTTTS*

>peptide 2 (51 aa)
METQHEGKKKVRTEQRAWPGAVHAPGRPTRRNTGRGRGGGRTGQLFVYHHH*

>peptide 3 (74 aa)
MENGDTARRKKKSAHRAAGMAWCCACTRPAHTTQHWQGPRRRKNRTIIRLPPPLASYARMAANTDDTATTYCRA*

>peptide 4 (36 aa)
MLHPVILTCSRCRTCIRCRTRSCLRSTTSFFLAIPL*

>peptide 5 (33 aa)
PIVKVGPSLLAHAHMPMKKETHCPIIQLNPSVG*

Sequence

>CNT304540
GCCCCATCGTCAAAGTAGGACCGTCTCTTTTAGCTCATGCTCATATGCCTATGAAAAAGGAAACACACTGCCCCATCATCCAACTTAATCCTAGCGTGGG
GTGAAGGAATAGATGGTCACATGACTAATATTCCTTGTACTAATGAATTTGTTGAGCATACACAGGAAAAATACAAGAACTATAAGAAATAACACCAGCA
CAAGTGTTGAGGCAAACGTTTGATGCCATATGGTCACATGACTAACATCTTGCACAGAGGAAGCCATCGAAACAAGATATGTACTGACGACGTCACAAAT
CGGATGCATATAGATGGAAAATGGAGACACAGCACGAAGGAAAAAAAAAAGTGCGCACAGAGCAGCGGGCATGGCCTGGTGCTGTGCATGCACCCGGCCG
GCCCACACGACGCAACACTGGCAGGGGCCGAGGAGGAGGAAGAACAGGACAATTATTCGTTTACCACCACCACTAGCTAGCTACGCGCGCATGGCGGCAA
ACACAGACGACACTGCTACAACATACTGCAGAGCTTGATTTAGGCCCCGTTTCAATCTCACGGGATAAACTTTAGCTTCCTACTAAACTTTAGCTATATG
AATTGAAGTGCTAAAGTTTAGTTTCAATTATCACCATTAGCTCTCCTGTTTAGATTACAAATGGCTAAAAGTAGCTAAAAAAAAGCTGCTAAAGTTTATC
TCGCGAGATTGAAACAGGGCCTTAGCTAGAGATACTGAAGGGTGTCCTTCCGATCTAGCTACTTCCTCCATCGTCACGGCCTGCATGCTGCACCCGGTCA
TCCTCACTTGCAGCCGCTGCCGCACTTGCATCCGCTGCCGCACCCGCAGTTGCCTCCGCAGCACGACATCCTTCTTCCTCGCGATCCCACTCTAGCTAGC
TCACGCGAAGAGAAGAAACCTGGGAGCTTACAACAACACAACCAGGAACTGAGACGCAACCCCTGCCCTGCTCCGAC