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Detailed information on CNT3045373

BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ASR1|EF2_ARATH, E-value = 1e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30675350	Prunus dulcis	Setaria viridis	19.26	72.6	84.11	151	forward
CNT30532226	Prunus dulcis	Eucalyptus grandis	43.62	47.3	87.43	342	forward
CNT30316236	Prunus dulcis	Corylus avellana	28.06	47.93	92.27	220	forward
CNT30547527	Prunus dulcis	Ipomoea triloba	38.27	69.28	84	300	forward
CNT30512951	Prunus dulcis	Juglans regia	73.09	73.46	86.91	573	forward
CNT30372986	Prunus dulcis	Arabidopsis thaliana	59.06	45.3	82.07	463	forward
CNT30276060	Prunus dulcis	Chenopodium quinoa	40.56	50.16	88.99	318	forward
CNT3019597	Prunus dulcis	Citrullus lanatus	51.15	53.61	84.04	401	forward
CNT30728649	Prunus dulcis	Corchorus capsularis	40.31	29.02	81.65	316	forward
CNT30379936	Prunus dulcis	Manihot esculenta	18.88	44.31	90.54	148	forward
CNT30405825	Prunus dulcis	Beta vulgaris	16.71	57.21	89.31	131	forward
CNT30488117	Prunus dulcis	Olea europaea	25.13	40.37	88.32	197	forward
CNT30711584	Prunus dulcis	Glycine max	31.89	35.51	85.2	250	forward
CNT30191304	Prunus dulcis	Secale cereale	48.85	29.44	83.55	383	forward
CNT30300473	Prunus dulcis	Triticum aestivum	72.83	58.99	79.68	571	forward
CNT30224354	Prunus dulcis	Hordeum vulgare	44.64	67.44	82.57	350	forward
CNT30395070	Prunus dulcis	Triticum turgidum	41.07	42.09	81.68	322	forward
CNT30561656	Prunus dulcis	Actinidia chinensis	72.45	40.57	82.39	568	forward
CNT3085191	Prunus dulcis	Vigna radiata	36.1	39.47	83.75	283	forward
CNT30510505	Prunus dulcis	Solanum lycopersicum	69.39	50.09	84.38	544	forward
CNT30552635	Prunus dulcis	Oryza glaberrima	28.06	21.19	85	220	forward
CNT30143941	Prunus dulcis	Medicago truncatula	34.06	59.6	83.15	267	forward
CNT30441158	Prunus dulcis	Aegilops tauschii	72.19	74.57	79.86	566	forward
CNT30309793	Prunus dulcis	Camelina sativa	58.16	58.61	80.92	456	forward
CNT3059659	Prunus dulcis	Arabidopsis lyrata	27.17	49.08	83.57	213	forward
CNT30612508	Prunus dulcis	Arabis alpina	58.04	17.93	82.86	455	forward
CNT3014085	Prunus dulcis	Zea mays	28.19	36.23	85.52	221	forward
CNT30605685	Prunus dulcis	Gossypium raimondii	40.82	41.88	85.62	320	forward
CNT30203835	Prunus dulcis	Helianthus annuus	35.2	57.5	80.07	276	forward
CNT30684236	Prunus dulcis	Triticum urartu	41.07	39.17	81.37	322	forward
CNT30345702	Prunus dulcis	Eragrostis tef	68.75	66.71	82	539	forward
CNT30361520	Prunus dulcis	Sorghum bicolor	39.8	45.61	83.33	312	forward
CNT30596122	Prunus dulcis	Oryza meridionalis	37.24	42.2	82.88	292	forward
CNT30359537	Prunus dulcis	Lactuca sativa	40.56	48.25	80.19	318	forward
CNT30369654	Prunus dulcis	Oryza glumipatula	28.06	25	85.45	220	forward
CNT30153558	Prunus dulcis	Prunus persica	30.61	71.01	98.75	240	forward
CNT30107537	Prunus dulcis	Oryza longistaminata	28.06	23.94	85	220	forward
CNT30332479	Prunus dulcis	Dioscorea rotundata	12.76	35.34	84	100	forward
CNT30149525	Prunus dulcis	Brachypodium distachyon	13.78	35.76	82.41	108	forward
CNT30100260	Prunus dulcis	Oryza rufipogon	53.57	58.5	82.14	420	forward
CNT30575986	Prunus dulcis	Oryza barthii	45.66	30.31	82.96	358	forward
CNT30497456	Prunus dulcis	Digitaria exilis	22.45	60.27	86.36	176	forward
CNT30116094	Prunus dulcis	Oryza nivara	28.06	25	85	220	forward
CNT30604019	Prunus dulcis	Oryza punctata	27.3	63.31	85.51	214	forward
CNT3050899	Prunus dulcis	Cucumis sativus	22.07	68.65	83.24	173	forward

Expression of CNT3045373

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MDQTTSSPNDQRHIVGRPALKSKPSVDQRTQKIQ*

>peptide 2 (82 aa)
MPTFLIKNTVDTTKSLLWSLDFNKIYRFKEPWLGSDLGSIDDPPSSGNNLTTSSVDGISMKNHITDFKANTPHVFFCQCTFL*

Sequence

>CNT3045373
GAGAAAGTACGATATATATCATAACCCATGTAGAAAATAGAGTAAGAAGTTCACCAAACGGAACATCATAACAGGGAAGATGAAGCTACAAGTCCCTAAC
AGTAACGGAGGACAGAACCAAACAAATTAAAATAGCTAAAGACCAAAAATATTGTAGTGCAATCTCCTCAGGCCAATTGGCAGGACAAAAAACTAATAGC
ACAGTAAATTGTTTAAAGCTTATCCTCAAACTCGGATAGCGGGGTCATTTGCTCCTTCAAGCCCTTCCTCTTGCGGATATCTGTAACAAGCTGTGCAGCC
TGGGATCCAACTTCCAATGGATCAGACGACATCATCTCCCAATGATCAAAGACACATTGTGGGAAGGCCTGCCCTGAAGTCGAAGCCCTCAGTTGACCAG
AGAACCCAAAAGATTCAATGACGGGGAGGTATGCCTTGATATTGTAGAGTGGAGTACCAGGCCTCTGCATTTCCTCAAACACATGCCCACGTTTCTGATT
AAGAACACTGTAGATACCACCAAGAGCCTGCTCTGGAGCTTGGATTTCAACAAGATATACAGGTTCAAGGAGCCTTGGCTTGGCAGTGATCTGGGAAGCA
TAGATGACCCTCCTAGCAGTGGGAATAACCTGACCACCTCCTCTGTGGATGGCATCAGCATGAAGAACCACATCACAGACTTCAAAGCAAATACCCCTCA
TGTTTTCTTCTGCCAATGCACCTTCCTTTGAAGCCCACTGGAAACCAGCAACAACAGAGTCCTTAATTTCATTCAGGTACTGAA