Detailed information on CNT30452760


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553677Saccharum spontaneumOryza glaberrima28.166.2385.978reverse complement
CNT30437845Saccharum spontaneumAegilops tauschii33.2122.0688.0492forward
CNT30578976Saccharum spontaneumEchinochloa crusgalli40.798.8988.5113forward

Expression of CNT30452760

Peptides detected in this lncRNA

>peptide 1 (53 aa)
PLTDPTVCWGFDPCPDRGRPAHPWLAGPRHPALYIEVGAGGSTHEVRLSRTPT*

>peptide 2 (44 aa)
MAGGPPSPCAIYRGGGRRLYTRGSPEPYSHLTYPKTRSREGRRR*

Sequence

>CNT30452760
CTCCACTAACAGACCCAACGGTCTGTTGGGGCTTTGATCCGTGCCCTGATCGGGGGCGCCCAGCCCATCCATGGCTGGCGGGCCCCCGTCACCCTGCGCT
ATATATAGAGGTGGGGGCCGGCGGCTCTACACACGAGGTTCGCCTGAGCCGTACTCCCACCTAACATACCCTAAGACCCGATCCAGAGAGGGGCGCAGGA
GGTGACGGGAAGCACTGCCGCCACGCCCTCTTCTCCGACACCGACGACCACTCCACGGACGACATGGCTGCCTCCGG