Detailed information on CNT30452541


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30207123Saccharum spontaneumHelianthus annuus3.1620.3190.3852reverse complement
CNT30104537Saccharum spontaneumOryza rufipogon4.8626.2392.580reverse complement

Expression of CNT30452541

Peptides detected in this lncRNA

>peptide 1 (88 aa)
MRSRRDMYPAGYSSRRISLRSRVAAAAAATASTAATATAFLAENCGSGSKLGSGDVENAGPAYTSAVGLAFLPWCLPAGGDLLLEAPG*

>peptide 2 (36 aa)
MKKFFFSLRSISHLSSAHFIKYTTWFNNDYPRIMQC*

>peptide 3 (56 aa)
MFPFRYWHPEFSLLILRPGMSGFVTELVLFFRLITSPNTRDRMIYLRRNKSSMAGC*

>peptide 4 (83 aa)
MNPHSYSTHTSIMTYHILLSTCTSQYRVYCCDHSTPPSQWDPTAAACLAAGHTIKLSRKHRRCSAEHIPGEQPELTCSSIDHA*

Sequence

>CNT30452541
CCAATCTGGAAATCAAGCGAGCTCCCCTTGCAATGATGTGGTGGTGAACCTCCCATTCATCTTCAGTGCTCTCTGAACCGGACGTGAGGGTCTCCCCTCA
TCCGGCTCTCTGCAGCAGAATTGACTATGAATTCTAGCCATAGCACATAGTTTTATAAAATCTATACGATTTTTCCAATCTAAATGTAGTGGGTTTTCAT
GAAGAAGTTCTTCTTTTCTTTGAGATCGATATCTCATCTTTCTTCCGCCCATTTTATAAAGTATACGACCTGGTTTAACAACGACTACCCAAGGATAATG
CAATGCTAAACCTGTGGAATTCACTTCTTCATGTTGTTTCGTTAAAGATCAAGTGAAACTGGAGGTGCTTCTGTGTGGCACTCTTTTAAATGGGCTTTAC
CATCTTTCTTTACCTTTAGAACACACTGCTTTGCTTGGGCCGAACAGTGGTAGAACCTGGTGAACCGGGGCGTCACAACCATCATTCGAGGAATGTTTCC
ATTCCGATACTGGCATCCGGAGTTCTCCCTACTGATCCTTCGGCCGGGAATGAGCGGCTTTGTTACAGAATTAGTACTATTTTTTAGACTAATTACTAGT
CCTAACACGAGAGACAGAATGATTTATTTGAGACGGAACAAGTCCTCAATGGCCGGTTGTTGAAATATATAGAAATGTGTATTGATGAACATAGACGGAG
AGGATTACATGCTGATGATGACTTATTACACGGATGAACCCACATAGTTACTCTACACACACGAGTATAATGACATATCATATACTACTATCTACTTGCA
CGTCACAGTACAGAGTATATTGCTGCGATCATTCTACACCGCCGTCGCAGTGGGATCCCACGGCCGCCGCGTGCCTCGCCGCCGGCCACACAATAAAACT
GAGCCGGAAGCATCGCCGCTGCAGCGCGGAACACATACCAGGAGAGCAGCCAGAACTAACATGCAGCTCGATCGATCATGCGTAGCAGACGAGATATGTA
TCCAGCTGGCTACTCCAGCCGCAGGATAAGCCTGAGGTCGCGCGTCGCGGCAGCGGCGGCGGCGACCGCGTCGACGGCGGCCACAGCTACAGCCTTCCTA
GCGGAGAACTGCGGTAGCGGCAGCAAGCTCGGGTCGGGGGACGTCGAGAACGCCGGCCCGGCGTACACCTCCGCTGTAGGCCTCGCCTTCCTGCCGTGGT
GTCTCCCGGCCGGCGGCGACCTCCTCCTGGAGGCGCCGGGGTGACGGTGGTTGTCGCTACCAGCAGGCCTCCGGTGCGCCGCCGCCACCCGGGTCCTCTG
CGGCGCCGGCATCAGGATGTTGTGCGCGCGCAACACATCGGTGGCCATGCCGACGACGACAGCGAGGGAGAAGGGGAAATAAGTTGGGCGCTGGCCGCCG
CTGCGCTTCTCACAGTTTGGTGGGTGGGTGTGGAATTCTGGTCGGGTCCGGGGCGCAGGTCTATTATTATAGGAGCGGAGACGCGGAAGAGGGATACTAG
TGGATTCGGTGGACGCGTTGCCGGCTATTGCCCTGCGACTTCCGGCGTCCGGCGTGGTTTTGGTGGACTTTGACAGCTTCCTCGCCGCTTCGCTTCGGTC
CCCTCCAGTCGACCGGTTCGGCGCATCTTCGCGTCCGTCTTTCTGA