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Detailed information on CNT30452352


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30106795Saccharum spontaneumOryza longistaminata23.6118.4487.8123reverse complement
CNT30578596Saccharum spontaneumOryza barthii24.7612.9982.17129forward

Expression of CNT30452352

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MTISASAAAASPVTMVAWQKTILSSPGPRQLCGTGSTSVGVVRVSGHRLLKYSGGPRHATPSAARCGGGQSQLRSTGQPSAGHC

>peptide 2 (29 aa)
LRYGRKRFHSSSSNTFRCMHLTRHACSVH*

>peptide 3 (34 aa)
YGTAVSVFIHRPQTHSDACTSRDTRAPCIENVSV*

Sequence

>CNT30452352
ACTACGGTACGGCCGTAAGCGTTTTCATTCATCGTCCTCAAACACATTCAGATGCATGCACCTCACGCGACACGCGTGCTCCGTGCATTGAAAATGTCTC
AGTTTAACAAATTTGTTTTTTTTGAGCAAGGAGTTTAACAAATTTGAAAACAATTATTTCGCTTCACTGCTGATTTCTAAAAACCACCGGAGATTCAACG
AAGCGAGGCCAATGGAGCTGGACGGCTCGGTCGATCAGTCTAGCTGTCGGCGGCGACGACGGAGCGGATGACCATCTCGGCTTCTGCGGCGGCGGCGTCG
CCCGTGACGATGGTCGCCTGGCAGAAGACGATCTTGAGCTCCCCGGGGCCGCGGCAGCTCTGCGGGACGGGCTCGACGTCAGTGGGCGTGGTCCGGGTGA
GCGGGCACCGGCTCTTGAAGTACTCCGGCGGGCCACGGCACGCCACACCCTCGGCTGCGCGCTGCGGGGGAGGGCAGTCGCAGTTGAGGTCGACGGGGCA
ACCCAGCGCCGGGCACTGTCC